1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TAGCCATGTTGCTCCACCAAAGTCATCAAATTTCTTTAATGAATTTGGAATGGACAGTGCTTTCCCCAAGAAGTCAAGCTCAAGCTCATCCAAAGCTCAGgtaaagaaaagtttcatttttaacagaactgaagaaagagatagaaatcaattctcgattcctctttgtttacctgttttctttttacttag
species | Arabidopsis thaliana |
transcript | AT5G46750.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGCTTTCCCCAAGAAGTCAAGCTCAAGCTCTATCCAAAGCTCAG GTTGAAGAAACAGATGAAGCAAGAAAGA-GTTTTCAAACGCCAAATCGATTEST: gi|86076412|gb|DR372169.1|DR372169
genomic: TGCTTTCCCCAAGAAGTCAAGCTCAAGCTC-ATCCAAAGCTCAGgtaaagaaaa ... ttttacttagGTTGAAGAAACAGATGAAGCAAGAAAGAAGTTTTCAAACGCCAAATCGATT
EST: TGGACAGTGCTTTCCCCAAGAAGTCAAGCTCAAGCTCATCCAAAGCTCAG GTTGAAGAAACAGATGAMGCAAGAAAGAAGTTTTCAAACGCCAAATCGATTEST: gi|116474060|gb|EG516652.1|EG516652
genomic: TGGACAGTGCTTTCCCCAAGAAGTCAAGCTCAAGCTCATCCAAAGCTCAGgtaaagaaaa ... ttttacttagGTTGAAGAAACAGATGAAGCAAGAAAGAAGTTTTCAAACGCCAAATCGATT
EST: TGGACAGTGCTTTCCCCA-GA-GTCAAGCTCAAGCTCATCCAAAGCTCAG -TTGAAGAAACAGATEST: gi|164118167|gb|ES167354.1|ES167354
genomic: TGGACAGTGCTTTCCCCAAGAAGTCAAGCTCAAGCTCATCCAAAGCTCAGgtaaagaaaa ... ttttacttagGTTGAAGAAACAGAT
EST: GGACAGTGCTTTCCCCAAGAAGTCAAGCTCAAGCTCAATCCAAAGCTCAG GTTGAAGAAACAGATGAAGCAAGAAAGAAGTTTTCAAACG
genomic: GGACAGTGCTTTCCCCAAGAAGTCAAGCTCAAGCTCA-TCCAAAGCTCAGgtaaagaaaa ... ttttacttagGTTGAAGAAACAGATGAAGCAAGAAAGAAGTTTTCAAACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGCCATGTTGCTCCACCAAAGTCATCAAATTTCTTTAATGAATTTGGAATGGACAGTGCTTTCCCCAAGAAGTCAAGCTCAAGCTCATCCAAAGCTCAGgtaaagaaaagtttcatttttaacagaactgaagaaagagatagaaatcaattctcgattcctctttgtttacctgttttctttttacttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA