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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAATTCTGGCTGTCAATGGAATGGATGTCAGTGGGAAATCATCCTTTGAAGTATCGTCTTTGTTACAAGGCCCTAGTAAAACTTTTGTAGTTCTCAAGgttattattcttaataataagatacatactaaattcattagtacttgatttaagtttggaatcaagatttttatgtagtttaagcatattgcag

Basic information

species Arabidopsis thaliana
transcript AT5G46390.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G46390.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv10s0003g02730.t01 (Vitis vinifera), 5'ss of exon 4
TGAAATTCTGGCTGTCAATGGAATGGATGTCAGTGGGAAATCATCCTTTGAAGTATCGTCTTTGTTACAAGGCCCTAGTAAAACTTTTGTAGTTCTCAAGgttattattcttaataataagatacatactaaattcattagtacttgatttaagtttggaa---tcaagatttttatgtagtttaagcatattgcag
||||||  || |||| ||||||||||||||||  ||||||||| | ||||||| ||| ||||||||||||||||| | | |||| |||||   |||  ||||| | ||| | ||| ||   | |  ||   | |      || ||   ||      || ||   |    ||   | |  |  | ||     || |||
TGAAATCTTGTCTGTTAATGGAATGGATGTCACAGGGAAATCAGCATTTGAAGCATCATCTTTGTTACAAGGCCCAAATGAAACATTTGTCACTCTTGAGgttttgattatgaatcattc-acatttatggagtgttactgtgctaacttctgtcatgtaacttttccaatgactgttcaaatcaaatg-gtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124835924|gb|EH920363.1|EH920363
EST:     AGTATCGTCTTTGTTACAAGGCCCTAGTAAAAACTTTTGTAGTTCTCAAG                         GTGAAGCATGG
genomic: AGTATCGTCTTTGTTACAAGGCCCTAGTAAAA-CTTTTGTAGTTCTCAAGgttattattc ... catattgcagGTGAAGCATGG