1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGCACAACGCATCCTTGATTGCTCAACCAGCACTTGTTGAGAACGAGAAGAAGCTTTTGGAAAAGATCAACATTCTCTGCCTTATCGAGATCATCTTCAGgtaaacttttctctaggcaattgtacctcacgccgtttcaatcaaagaaataaaatcatgtgctaatacatttgattttaaactctacatcag
species | Arabidopsis thaliana |
transcript | AT5G45620.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGCTTTTGGAAAAGATCAACATTCTCTGCCTTATCGAGATCATCTTCAG CCGACCCGCTGAAGATAGAACCATTCCTTTGAGCATCEST: gi|125068038|gb|EL134325.1|EL134325
genomic: AAGCTTTTGGAAAAGATCAACATTCTCTGCCTTATCGAGATCATCTTCAGgtaaactttt ... tctacatcagCCGACCCGCTGAAGATAGAACCATTCCTTTGAGCATC
EST: AAGCTTTTGGAAAAGATCAACATTCTCTGCCTTATCGAGATCATCTTCAG CCGACCCGCTGAAGGTAGAEST: gi|164077164|gb|ES201072.1|ES201072
genomic: AAGCTTTTGGAAAAGATCAACATTCTCTGCCTTATCGAGATCATCTTCAGgtaaactttt ... tctacatcagCCGACCCGCTGAAGATAGA
EST: GATCATCTTCAG CCGACCCGCTGAAGATAGAACCATTCCTTTGAGCATCATCGCTGAGCGTACEST: gi|124718178|gb|EH809580.1|EH809580
genomic: GATCATCTTCAGgtaaactttt ... tctacatcagCCGACCCGCTGAAGATAGAACCATTCCTTTGAGCATCATCGCTGAGCGTAC
EST: TCAACATTCTCTGCCTTATCGAGATCATCTTCAG CCGACCCGCTGAAGATAGAACCATTCCTTTGAGCATCATCGCTGAGCGTAC
genomic: TCAACATTCTCTGCCTTATCGAGATCATCTTCAGgtaaactttt ... tctacatcagCCGACCCGCTGAAGATAGAACCATTCCTTTGAGCATCATCGCTGAGCGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCACAACGCATCCTTGATTGCTCAACCAGCACTTGTTGAGAACGAGAAGAAGCTTTTGGAAAAGATCAACATTCTCTGCCTTATCGAGATCATCTTCAGgtaaacttttctctaggcaattgtacctcacgccgtttcaatcaaagaaataaaatcatgtgctaatacatttgattttaaactctacatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA