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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATACATTACTCAAAGAAGTTGGTGACGGAACATTTGGGAATGTTTGGCGAGCTGTCAATAAACAGACGAATGAAGTTgtaagtatttttcattgagagataaagacgtgtataatgatttgtgtatggtttctagggtactgaagttttctatgtacag

Basic information

species Arabidopsis thaliana
transcript AT5G45430.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G45430.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os06g02555.1 (Oryza sativa), 5'ss of exon 2
GTATACATTACTCAAAGAAGTTGGTGACGGAACATTTGGGAATGTTTGGCGAGCTGTCAATAAACAGACGAATGAAGTTgtaagtatttttcattg-------agagataaagacgtgtata--atgatttgtgtatggtttctag------ggtactgaagttttctatgtacag----
|||||   |  | || ||||||||||||||||||||||||| ||||||||| ||  |||| ||| |||    |||||| ||| |    | |  |||       |    |||    || |||   |||| || | |||  |||  ||       | | |   | |   | | ||  |    
GTATAAGATTATTAAGGAAGTTGGTGACGGAACATTTGGGAGTGTTTGGCGCGCGATCAACAAAGAGAGTGGTGAAGTGgtatgccactctacttgccccaatatttgtaattttgtttatgttatgacttat-tatttttttcagtagctaagcagtttggctgcttgtttattggtac

upper sequence: AT5G45430.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM5G864414_T02 (Zea mays), 5'ss of exon 5
GTATACATTACTCAAAGAAGTTGGTGACGGAACATTTGGGAATGTTTGGCGAGCTGTCAATAAACAGACGAATGAAGTTgtaagtatttttcattgagagataaagacgtgtataatgatttgtgtatggtttctagg---gtactgaagttttctatgtacag----------------------------------
 |||||| |  |||| ||||||||||| ||||||||||||| ||||||||| ||   ||||||  | |    |||||| ||| ||  ||    |||     |     | ||| | |    ||   | |  |   |||      | |  ||||  | ||    ||                                  
ATATACAATTATCAACGAAGTTGGTGATGGAACATTTGGGAGTGTTTGGCGTGCAACCAATAAGGAAAGCGGTGAAGTGgtatgtcattaggcttgcccatttgttgcttgtgttacaccttaacttttttcaatagttacacagttcagttacccattgttagccttttcaccttattaagatacctgggctgatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059416|gb|DR355173.1|DR355173
EST:     GAACATTTGGGAATGTTTGGCGAGCTGTCAATAAACAGACGAATGAAGTT                         GTGGCAATTAAAAGAATGAAGAAGAAGTATTTCTCTTGGGAAGAGTGTGTG
genomic: GAACATTTGGGAATGTTTGGCGAGCTGTCAATAAACAGACGAATGAAGTTgtaagtattt ... ctatgtacagGTGGCAATTAAAAGAATGAAGAAGAAGTATTTCTCTTGGGAAGAGTGTGTG
EST: gi|116444408|gb|EG487000.1|EG487000
EST:     GAACATTTGGGAATGTTTGGCGAGCTGTCAATAAACAGACGAATGAAGTT                         GTGGCAATTAAAAGAATGAAGAAGAAGTATTTCTCTTGGGAAGAGTGTGTG
genomic: GAACATTTGGGAATGTTTGGCGAGCTGTCAATAAACAGACGAATGAAGTTgtaagtattt ... ctatgtacagGTGGCAATTAAAAGAATGAAGAAGAAGTATTTCTCTTGGGAAGAGTGTGTG
EST: gi|116444419|gb|EG487011.1|EG487011
EST:     GAACATTTGGGAATGTTTGGCGAGCTGTCAATAAACAGACGAATGAAGTT                         GTGGCAATTAAAAGAATGAAGAAGAAGTATTTCTCTTGGGAAGAGTGTGTG
genomic: GAACATTTGGGAATGTTTGGCGAGCTGTCAATAAACAGACGAATGAAGTTgtaagtattt ... ctatgtacagGTGGCAATTAAAAGAATGAAGAAGAAGTATTTCTCTTGGGAAGAGTGTGTG