Sequence
atgc intronic sequence ATGC exonic sequenceCATCAGTATCATCTATAGGATCTGTTCCTGCACCTAACGACGTTGTGGATTTATTACCGATAAAACTTTATACTAAGTCACAAAGCGAGGATCCATCACAgtaatgcatactaaattctcagatctttcttttgccaattgtgatgctcaaaagtctcgagacctaatggttaaacatgttttttcctggaacctcag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G45290.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G45290.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA01G35490.1 (Glycine max), 5'ss of exon 4
CATCAGTATCATCTATAGGATCTGTTCCTGCACCTAACGACGTTGTGGATTTATTACCGATAAAACTTTATACTAAGTCACAAAGCGAGGATCCATCACAgtaatgcatactaaat-tctcagatctttcttttgccaattgtgatg--ctcaaaagtctcgagacctaatggttaaacatgttttttcctggaacctcag------------
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------TGTCATCTATCGGTTCTGTTCCTGCACCTAATGAAGTTGTGGAATCCTTGCCTGTCAAATTATACACTAAGTTGCA---CAAACATCAAGAAGAACC-TGTACAgtaagtattccggctcacccttctcacagtgttcattttctcaaatgcctttggattttct---tgaacactttcatttccatttctttaatataaatcattc
upper sequence: AT5G45290.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G35060.1 (Glycine max), 5'ss of exon 6
CATCAGTATCATCTATAGGATCTGTTCCTGCACCTAACGACGTTGTGGATTTATTACCGATAAAACTTTATACTAAGTCACAAAGCGAGGATCCATCACAgtaatgcatactaaattctcaga-tctttcttttgccaattgtgatgctcaaaagtctcgagacctaatggttaaacatgttttttcctggaacctcag-------------
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------TGTCATCTATCGGTTCCGTTCCTGCACCTAATGACGTTGTGGAATCCTTGCCTGTCAAATTATACACAAAGTTGCA---CAAACATCAAGAAGAACC-TGTACAgtaagtattgaggctcatccttctcactgttcattttctcaaatgcctttggattt--ttctttttctatttttcttgtccactttcatttccacttcttta
upper sequence: AT5G45290.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G08260.1 (Glycine max), 5'ss of exon 7
CATCAGTATCATCTATAGGATCTGTTCCTGCACCTAACGACGTTGTGGATTTATTACCGATAAAACTTTATACTAAGTCACA-AAGC-----GAGGATCCATCACAgtaa-tgcatactaaattctcagatctttcttttgccaattgt-----gatgctcaaaagtctcgagacctaatggttaaacatgttttttcctggaacctcag
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------TATCTTCTATTGGATCTGTTCCTGCACCTAATGATGTTGTCGATTCCTTGCCTGTCAAGTTATATGAGAAGTTGCATAAGCATCAAGAGGATGCTGCGCAgtaagtcttttctatatttttatccgtatgaattgaacatagtaccaggaagtttacaacactc-atacactctgttcaaccaa--ttgagctagacactact-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124864012|gb|EH948449.1|EH948449EST: TTATTACCGATAAAACTTTATACTAAGTCACAAAGCGAGGATCCATCACA ATGTTACATAT
genomic: TTATTACCGATAAAACTTTATACTAAGTCACAAAGCGAGGATCCATCACAgtaatgcata ... ggaacctcagATGTTACATAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATCAGTATCATCTATAGGATCTGTTCCTGCACCTAACGACGTTGTGGATTTATTACCGATAAAACTTTATACTAAGTCACAAAGCGAGGATCCATCACAgtaatgcatactaaattctcagatctttcttttgccaattgtgatgctcaaaagtctcgagacctaatggttaaacatgttttttcctggaacctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT