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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATTAAAACACCGCAGCGACTCGGTGAAGGGTTAGAGTCATGGTGTGGGTTTTACCAGAGTATTAGACCAACTCAAATGGGTTTATCACTAAATATCGgtaaagatttgacttaagagattgttacagttttggttttattttataagtcagcccaatcttaatgttattctccttactttgtag

Basic information

species Arabidopsis thaliana
transcript AT5G43810.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G43810.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G28970.1 (Glycine max), 5'ss of exon 5
GATATTAAAACACCGCAGCGACTCGGTGAAGGGTTAGAGTCATGGTGTGGGTTTTACCAGAGTATTAGACCAACTCAAATGGGTTTATCACTAAATATCGgtaaagatttgacttaagagattgttacagttttggtt--ttattttataagtca-gcccaatctta-atgttattctccttactttgtag-----------
||||||| ||||||||| || || || || || ||||||||||||||||| |||||||||||||| || || || ||||||||  | || || ||||| |||| |   || |  |      |      |||  ||  |  |||      ||| || |  || | ||| |  || || ||  |  |||  ||           
GATATTAGAACACCGCAACGGCTTGGAGAGGGATTAGAGTCATGGTGTGGATTTTACCAGAGTATAAGGCCTACACAAATGGGCCTTTCCCTTAATATTGgtatattatttatgttgattgtacaagtagtcctgtgtaattacaaatgaaggcatgttcacttttagaaattgttttc--tgttttcaagtatttgtaaag

upper sequence: AT5G43810.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G38770.1 (Glycine max), 5'ss of exon 5
GATATTAAAACACCGCAGCGACTCGGTGAAGGGTTAGAGTCATGGTGTGGGTTTTACCAGAGTATTAGACCAACTCAAATGGGTTTATCACTAAATATCGgtaaag-atttgacttaaga--gattgttacagttttggttttattttataagtcagcccaatcttaatgtta----ttctccttactttgtag------
||||||| ||||||||| || || || || || ||||| ||||||||||| |||||||||||||| || || || ||||||||  | || || ||||| |||| |  ||||   || | |  |||| |   |||  |    | |   || ||   |  ||    ||| | |||    || |  ||  |||  |       
GATATTAGAACACCGCAACGGCTTGGAGAGGGATTAGAATCATGGTGTGGATTTTACCAGAGTATAAGGCCTACACAAATGGGCCTTTCCCTTAATATTGgtatatcatttatatttatattgattatataagtagtccaatgaaagtacaaaggaagccttgtttacttttagaaattgttttttgttttcaaatattt

upper sequence: AT5G43810.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 4
GATATTAAAACACCGCAGCGACTCGGTGAAGGGTTAGAGTCATGGTGTGGGTTTTACCAGAGTATTAGACCAACTCAAATGGGTTTATCACTAAATATCGgtaaagatttgact--taagagattgttacagtt-ttggttttattttataagtcagcccaatcttaatgttattctcct-tactttgtag------------
||||||| | |||| || || || || ||||| || |||||||||||||| || ||||||||||| ||||| ||||| |||||||| ||||| ||||| |||||| |   ||    |||||  ||  |  |  | || ||| | ||       |||     |  ||  | ||||| |||  | || | |              
GATATTAGAGCACCTCAACGTCTTGGAGAAGGTTTGGAGTCATGGTGTGGATTCTACCAGAGTATAAGACCTACTCAGATGGGTTTGTCACTGAATATTGgtaaataaaagatggataagaagttcctgtaaatattagttcttttactgttttcaattttaaattgctcttattttcccatcctctatttttgccttgttag

upper sequence: AT5G43810.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S173_134V6.1 (Physcomitrella patens), 5'ss of exon 4
GATATTAAAACACCGCAGCGACTCGGTGAAGGGTTAGAGTCATGGTGTGGGTTTTACCAGAGTATTAGACCAACTCAAATGGGTTTATCACTAAATATCGgtaaagatttgacttaagagattgttacagttttggttttattttataagtcagcc-caatcttaatgttattctccttactttgtag--------------------------------------
||| |    || |  | || | | || || ||  | ||    ||| | || ||||| ||||||||| |||||||||||||||| || || ||||| || |||||    |     |       | |  |  | |   | |   | | |    |   | | | ||    ||| |  || | |  |    |                                      
GATCTGGGCACGCGACGGCCATTAGGAGATGGTCTTGAAAGCTGGCGGGGCTTTTATCAGAGTATTCGACCAACTCAAATGGGGTTGTCCCTAAACATTGgtaatctctctctctctctctctctctctctctctctctctctctctcttcccctctcgaactcgtcgttgtattcatgaaatgtccgtacttacaatgtttcatgtccttttgcttctgttacag