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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGATTCAAGCTTTTTCGCTTCTTGTTGTCGGTCCTTTAGTTGATTATCTTCTTAGTGGGAAGTTCATTATGAAGTATAATATGTCTTCCGGTTGCTTTgtaagtatctctcttcatggctctgctagtattgttatgttatcattggctaatgttctacaatttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G42420.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116465657|gb|EG508249.1|EG508249
EST:     TTCTTAGTGGGAAGTTCATTATGAAGTATAATATGTCTTCCGGTTGCTTT                         CTATTCATTCTTCTCTCATGTGGTCTAGCTGTGTTCTGCAACATAAGCCAG
genomic: TTCTTAGTGGGAAGTTCATTATGAAGTATAATATGTCTTCCGGTTGCTTTgtaagtatct ... caatttgcagCTATTCATTCTTCTCTCATGTGGTCTAGCTGTGTTCTGCAACATAAGCCAG
EST: gi|86079446|gb|DR375203.1|DR375203
EST:     TCATTATGAAGTATAATATGTCTTCCGGTTGCTTT                         CTATTCATTCTTCTCTCATGTGGTCTAGCTGTGTTCTGCAACATAAGCCAG
genomic: TCATTATGAAGTATAATATGTCTTCCGGTTGCTTTgtaagtatct ... caatttgcagCTATTCATTCTTCTCTCATGTGGTCTAGCTGTGTTCTGCAACATAAGCCAG