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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGTAGCTTTGCATATTGCTCAGGCGCTAGAGTATTGTACCAGCAAAGGACGTGCACTTTACCATGACCTAAATGCTTATAGAGTTCTCTTTGATGATgtaagtttgatacagatttttttacctttggtttctgtcaagtgtatatgagaataattttatgtttttgtttcttag

Basic information

species Arabidopsis thaliana
transcript AT5G41260.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G41260.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os04g58750.2 (Oryza sativa), 5'ss of exon 5
GAGAGTAGCTTTGCATATTGCTCAGGCGCTAGAGTATTGTACCAGCAAAGGACGTGCACTTTACCATGACCTAAATGCTTATAGAGTTCTCTTTGATGATgtaagtttgatacagatttttttacctttggtttctgtcaagtgtatatgagaataattttatgtt-tttgtttcttag--
 ||||| | | |  || | ||| ||||  |||| ||||| |||||||| || ||||| || |||||||| || ||||| || |||||||||||||||||||| ||| | ||| ||||| ||||   |   ||     ||  |||| | |   || | || |||||| |||   |   |   
AAGAGTTGTTCTCTATCTGGCTGAGGCTTTAGAATATTGCACCAGCAAGGGGCGTGCTCTGTACCATGATCTTAATGCCTACAGAGTTCTCTTTGATGATgtgagtatcatatagattgtttt-tgtaacgtgatcatct-gtgtgttttgtaacatttctatgttgtttacatggcacag

upper sequence: AT5G41260.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G01730.2 (Glycine max), 5'ss of exon 5
GAGAGTAGCTTTGCATATTGCTCAGGCGCTAGAGTATTGTACCAGCAAAGGACGTGCACTTTACCATGACCTAAATGCTTATAGAGTTCTCTTTGATGATgtaagtttgatacagatttttttacctttggtttctg--tcaagtgtatatgagaataattttatgtt--tttgtttcttag------------------
|||||| ||| ||    |||| || || |||||||| |||||||||||||||||||| || || ||||| || |||||||| |||||||| | |||||||||||||||  |       | | |  | |    || |   |||||  ||    |   |    | ||| |  | ||  | |||                   
GAGAGTTGCTCTGTGCCTTGCCCAAGCTCTAGAGTACTGTACCAGCAAAGGACGTGCTCTATATCATGATCTGAATGCTTACAGAGTTCTTTATGATGATgtaagtttattttcttcatctgtgacatgaccttattattcaaggttaaggaattgttggatgatgctcatctgcatgttaattgtcttttattcttatg

upper sequence: AT5G41260.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA05G37870.1 (Glycine max), 5'ss of exon 6
GAGAGTAGCTTTGCATATTGCTCAGGCGCTAGAGTATTGTACCAGCAAAGGACGTGCACTTTACCATGACCTAAATGCTTATAGAGTTCTCTTTGATGATgtaagttt---------------gatacagatttttttacc-----tttggtttctgtcaagtgtatatgagaataattttatgttt---ttgtttcttag
||| || ||| ||    |||| || || |||||||| ||||||||||||||||||||||| || ||||| || ||||| || |||||||| | |||||||||||||||               || |     ||| ||||      ||  | |  |||    ||    | |||| |     || | |   |||| | ||| 
GAGGGTTGCTCTGTGCCTTGCCCAAGCTCTAGAGTACTGTACCAGCAAAGGACGTGCACTATATCATGATCTGAATGCCTACAGAGTTCTTTATGATGATgtaagtttattttcttcatctgtgacatgacctttattactcaaggttaaggtattgttggatggtgctcagaacatgcagatatgttaattgtctttta-

upper sequence: AT5G41260.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv02s0025g03550.t01 (Vitis vinifera), 5'ss of exon 6
GAGAGTAGCTTTGCATATTGCTCAGGCGCTAGAGTATTGTACCAGCAAAGGACGTGCACTTTACCATGACCTAAATGCTTATAGAGTTCTCTTTGATGATgtaagtttgatacagatttttttacctttggtttctgtcaagtgtatatgagaataattt-tatgtttttgtttcttag------
 || || |||||  || |||| || ||  | || ||||||||||||||||||||||||||||| ||||| || |||||||||||| || | ||||||||||||||| || | |   ||||      | |||| | | |    | | | | |||||  ||  ||  ||  | ||  | |       
AAGGGTGGCTTTATATCTTGCACAAGCTTTGGAATATTGTACCAGCAAAGGACGTGCACTTTATCATGATCTTAATGCTTATAGAATTGTTTTTGATGATgtaagtatgttgctttttttcaattttatggtattttttttttctcttttagaatctttgatacattgctcttattaaatctcag