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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCATATACATAGTTGGAGAATCTATTGGAGCTTGTCTTGCTCTAGATGTTGCAGCCAGTAACCCTGACATTGATCTTGTCTTGATTCTAGCTAATCCAGgtaaagcaagactcgttttttctggatcattgagatcctttattgtgtttctctagatattctaggccaaagttatgtaagaacgatggttcaagctcaaatatgtgtcatgagaaaattacgtactttatgatttaagcgtgtcgttttgtttgttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G41130.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G41130.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv14s0068g01440.t01 (Vitis vinifera), 5'ss of exon 4
CCCATATACATAGTTGGAGAATCTATTGGAGCTTGTCTTGCTCTAGATGTTGCAGCCAGTAACCCTGACATTGATCTTGTCTTGATTCTAGCTAATCCAGgtaaagcaagactcgttttttctggatcattgagatcctttattgtg-tttctctagatattctaggccaaagttatgtaagaacgatggttcaagctcaaatatgtgtcatgagaaaattacgtactttatgatttaagcgtgtcgttttgtttgttgcag
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CCCATATACCTTGTTGGAGAATCTCTTGGAGGATGCCTTGCTCTAGCTGTTGCAGCCCGTAACCCTGATATTGATCTTGCACTCATTTTGGCTAACCCAGgtgag----aacttcctttttgtaaattatgttgatgagagcttatactttcacttgatttatt----cactgctataaatggtcctt--ttcaattccagcaaaaattc----------------------------------------------------