1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTATCTGCAAGCATAGCTGGTGACATTGTTAAAGCTTCGGCTTACGCACATGAGCTTCCTCAGTATGGACTCACTGTTGGTCTTACCAACTATGCTGCAGgtattgaatcagttctatacttttgttttcccaatatttgattctgtgtgtatggtttcttaaagacttaatgtttttgtcatgctag
species | Arabidopsis thaliana |
transcript | AT5G39740.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTCACTGTTTGGTCTTACCAACTATGCTGCAG CTTACTGTACTGGCCTTCTTTTGGCTCGTCGTGTTCTGAAAATGCTGGAAAEST: gi|125030521|gb|EL102790.1|EL102790
genomic: CTCACTG-TTGGTCTTACCAACTATGCTGCAGgtattgaatc ... gtcatgctagCTTACTGTACTGGCCTTCTTTTGGCTCGTCGTGTTCTGAAAATGCTGGAAA
EST: AGCTTCCTCAGTATGGACTCACTGTTGGTCTTACCAACTATGCTGCAG CTTACTGTACTGGCCTTCTTTTAGGCTCGTCGTGTTCTGAAAATGCTGGAAEST: gi|164171723|gb|ES204694.1|ES204694
genomic: AGCTTCCTCAGTATGGACTCACTGTTGGTCTTACCAACTATGCTGCAGgtattgaatc ... gtcatgctagCTTACTGTACTGGCCTTCTTTT-GGCTCGTCGTGTTCTGAAAATGCTGGAA
EST: CCAACTATGCTGCAG CTTACTGTACTGGCCTTCTTTTGGCTCGTCGTGTTCGTGAAAATGCTGGAAEST: gi|116398433|gb|EG441025.1|EG441025
genomic: CCAACTATGCTGCAGgtattgaatc ... gtcatgctagCTTACTGTACTGGCCTTCTTTTGGCTCGTCGTGTTC-TGAAAATGCTGGAA
EST: TGAGCTTCCTCAGTATGGACTCACTGTTGGTCTTACCAACTATGCTGCAG CTTACTGTACTGGCCTTCTTTTGGCTCGTCGTGTTCTGAAAATGCTGGAAAEST: gi|164235519|gb|ES002528.1|ES002528
genomic: TGAGCTTCCTCAGTATGGACTCACTGTTGGTCTTACCAACTATGCTGCAGgtattgaatc ... gtcatgctagCTTACTGTACTGGCCTTCTTTTGGCTCGTCGTGTTCTGAAAATGCTGGAAA
EST: CACTGTTGGTCTTACCAACTATGCTGCAG CTTACTGTACTGGCCTTCTTTTGGCTCGTCGTGTTCTGAAAATGCTGGAAAEST: gi|125201477|gb|EL216431.1|EL216431
genomic: CACTGTTGGTCTTACCAACTATGCTGCAGgtattgaatc ... gtcatgctagCTTACTGTACTGGCCTTCTTTTGGCTCGTCGTGTTCTGAAAATGCTGGAAA
EST: AGCTTCCTCAGTATGGACTCACTGTTGGTCTTACCAACTATGCTGCAG CTTACTGTACTGGCCTTCTTTTGGCTCGTCGTGTTCTGAAAATGCTGGAAEST: gi|164059358|gb|ES112609.1|ES112609
genomic: AGCTTCCTCAGTATGGACTCACTGTTGGTCTTACCAACTATGCTGCAGgtattgaatc ... gtcatgctagCTTACTGTACTGGCCTTCTTTTGGCTCGTCGTGTTCTGAAAATGCTGGAA
EST: TGAGCTTCCTCAGTATGGACTCACTGTTGGTCTTACCAACTATGCTGCAG CTTACTGTACTGGCCTTCEST: gi|116398349|gb|EG440941.1|EG440941
genomic: TGAGCTTCCTCAGTATGGACTCACTGTTGGTCTTACCAACTATGCTGCAGgtattgaatc ... gtcatgctagCTTACTGTACTGGCCTTC
EST: TGAGCTTCCTCAGTATGGACTCACTGTTGGTCTTACCAACTATGCTGCAG CTTACTGTACTGGCCTTCTTTTGGCTCGTCGTGTTCTGAAAATGCTGGAAA
genomic: TGAGCTTCCTCAGTATGGACTCACTGTTGGTCTTACCAACTATGCTGCAGgtattgaatc ... gtcatgctagCTTACTGTACTGGCCTTCTTTTGGCTCGTCGTGTTCTGAAAATGCTGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATCTGCAAGCATAGCTGGTGACATTGTTAAAGCTTCGGCTTACGCACATGAGCTTCCTCAGTATGGACTCACTGTTGGTCTTACCAACTATGCTGCAGgtattgaatcagttctatacttttgttttcccaatatttgattctgtgtgtatggtttcttaaagacttaatgtttttgtcatgctag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG