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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATCTTGCAGCAAGGTTTTGAGAACAGAGATGCATTTTATGGAAGCTCTGGGAACTTGTTCTCCATAAGTCCAGTCTTTCACGCATTCTCATCTTCTGgtatcgcaaatatcgaacatttttcggcacactcgcttttccagtagtccagtctttcatacttatgtgttaacaatcttcag

Basic information

species Arabidopsis thaliana
transcript AT5G39590.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86082293|gb|DR378052.1|DR378052
EST:     TCTCCATAAGTCCAGTCTTTCACGCATTCTCATCTTCTG                         GTAAGGAGAAAAACTTTGCGTATAGCCATCTGCACCCTGCTGGCGGAGTGT
genomic: TCTCCATAAGTCCAGTCTTTCACGCATTCTCATCTTCTGgtatcgcaaa ... caatcttcagGTAAGGAGAAAAACTTTGCGTATAGCCATCTGCACCCTGCTGGCGGAGTGT
EST: gi|124880438|gb|EH959340.1|EH959340
EST:     TGGGAACTTGTTCTCCATAAGTCCAGTCTTTCACGCATTCTCATCTTCTG                         GTAAGGAGAAAAACTTTGCGTAT
genomic: TGGGAACTTGTTCTCCATAAGTCCAGTCTTTCACGCATTCTCATCTTCTGgtatcgcaaa ... caatcttcagGTAAGGAGAAAAACTTTGCGTAT
EST: gi|116452163|gb|EG494755.1|EG494755
EST:     TGGGAACTTGTTCTCCATAAGTCCAGTCTTTCACGCATTCTCATCTTCTG                         GTAAGGAGAAAAACTTTGCGTATAGCCATCTGCACCCTGCTGGCGGAGTGT
genomic: TGGGAACTTGTTCTCCATAAGTCCAGTCTTTCACGCATTCTCATCTTCTGgtatcgcaaa ... caatcttcagGTAAGGAGAAAAACTTTGCGTATAGCCATCTGCACCCTGCTGGCGGAGTGT