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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTAGATATATGGAGTTGTGGGGTGATATTATATGCTCTGTTGTGTGGTACTCTTCCTTTCGATGACGAAAATATTCCTAATGTATTCGAGAAAATAAAGgtattaataaacaacgatctttttataaaaatcatatatattacacatggttatgaattttttctctatttctttag

Basic information

species Arabidopsis thaliana
transcript AT5G39440.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G39440.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G107867_T02 (Zea mays), 5'ss of exon 5
TGTAGATATATGGAGTTGTGGGGTGATATTATATGCTCTGTTGTGTGGTACTCTTCCTTTCGATGACGAAAATATTCCTAATGTATTCGAGAAAATAAAGgtattaataaacaacgatctttt-tataaaaatcatatatattacacatggttatgaattttt--tctctatttctttag--------------
 || ||| |||||||||||||||||||  | ||||||||  | ||||| |||||||| || ||||| || |||||||| ||| | ||| | ||||| |||||   |  || ||   || |    || |||  |   |   |||| |    ||| || | || |   | || | | | | |              
GGTCGATGTATGGAGTTGTGGGGTGATTCTTTATGCTCTTCTTTGTGGAACTCTTCCATTTGATGATGAGAATATTCCCAATCTGTTCAAAAAAATTAAGgtg--agaaagcacttatgtggaatacaaaccttgcaacaattagattctgttctggagttatgaccactctctatctggttttacggttttag