1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTCATCCCCGCATTATTCACCGTGACATAAAATCTTCCAACATACTTCTTGATAACAGCTTTGAAGCCTTGgtaacatcatatgagctttattctagtcattaaacggtctttctttcacaacgctgacctcttaagcaagttttttgtcacag
species | Arabidopsis thaliana |
transcript | AT5G38560.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTGACATAAAATCTTCCAACATACTTCTTGATAACAGCTTTGAAGCCTTG GTTGCGGATTTTGGACTTGCAAAAATTGCACAAGAACTGGATTTAAACACAEST: gi|116453662|gb|EG496254.1|EG496254
genomic: GTGACATAAAATCTTCCAACATACTTCTTGATAACAGCTTTGAAGCCTTGgtaacatcat ... tttgtcacagGTTGCGGATTTTGGACTTGCAAAAATTGCACAAGAACTGGATTTAAACACA
EST: GTGACATAAAATCTTCCAACATACTTCTTGATAACAGCTTTGAAGCCTTG GTTGCGGATTTTGGACTTGCAAAAATTGCACAAGAACTGGATTTAAACACAEST: gi|116453644|gb|EG496236.1|EG496236
genomic: GTGACATAAAATCTTCCAACATACTTCTTGATAACAGCTTTGAAGCCTTGgtaacatcat ... tttgtcacagGTTGCGGATTTTGGACTTGCAAAAATTGCACAAGAACTGGATTTAAACACA
EST: GTGACATAAAATCTTCCAACATACTTCTTGATAACAGCTTTGAAGCCTTG GTTGCGGATTTTGGACTTGCAAAAATTGCACAAAAACTGGATTTAAACACA
genomic: GTGACATAAAATCTTCCAACATACTTCTTGATAACAGCTTTGAAGCCTTGgtaacatcat ... tttgtcacagGTTGCGGATTTTGGACTTGCAAAAATTGCACAAGAACTGGATTTAAACACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCATCCCCGCATTATTCACCGTGACATAAAATCTTCCAACATACTTCTTGATAACAGCTTTGAAGCCTTGgtaacatcatatgagctttattctagtcattaaacggtctttctttcacaacgctgacctcttaagcaagttttttgtcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC