1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGCTGCTGGTGTTGATGCTGATCTTAGATACAGTTATCTGATGAACACTAGCATCAGTGGACTTGAAAACGCCGATCTCTTCCTTCTCATCGGTACCCAGgtgagatttccaccctgtcttttttgtatggtttctggtaccggattagacagaccgctctgtatttggaacaatgacataagaaaaaccaaattgtgta...
species | Arabidopsis thaliana |
transcript | AT5G37510.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCATCAGTGGACTTGAAAACGCCGATCTCTTCCTTCTCATCGGTACCCAG CCCTAGGGTGGAAGCTGCAATGGTGEST: gi|116446466|gb|EG489058.1|EG489058
genomic: GCATCAGTGGACTTGAAAACGCCGATCTCTTCCTTCTCATCGGTACCCAGgtgagatttc ... tttttaccagCC-TAGGGTGGAAGCTGCAATGGTG
EST: GCATCAGTGGACTTGAAAACGCCGATCTCTTCCTTCTCATCGGTACCCAG CCTAGGGTGGAAGCTGCAATGGTGAATGCTAGGATCTGCAAGACAGTCCGT
genomic: GCATCAGTGGACTTGAAAACGCCGATCTCTTCCTTCTCATCGGTACCCAGgtgagatttc ... tttttaccagCCTAGGGTGGAAGCTGCAATGGTGAATGCTAGGATCTGCAAGACAGTCCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTGCTGGTGTTGATGCTGATCTTAGATACAGTTATCTGATGAACACTAGCATCAGTGGACTTGAAAACGCCGATCTCTTCCTTCTCATCGGTACCCAGgtgagatttccaccctgtcttttttgtatggtttctggtaccggattagacagaccgctctgtatttggaacaatgacataagaaaaaccaaattgtgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctgtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accgctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa