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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATGTTGATCTTATAGGACAATTAGGATTCGGTGCTTACAGATTTTCTATATCTTGGTCTCGAATTTTCCCTGgtatgtttaaatatattgtgttgtttatagttgctactttgttacttactaatccattttagttaattttggataaactataatgtgtgtgttctgcagt...

Basic information

species Arabidopsis thaliana
transcript AT5G36890.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G36890.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os01g67220.3 (Oryza sativa), 5'ss of exon 4
GAAGATGTTGATCTTATAGGACAATTAGGATTCGGTGCTTACAGATTTTCTATATCTTGGTCTCGAATTTTCCCTGgtatgtttaaata-tattgtgttgtttatagttgctactttgttacttactaatccattttagttaattttggataaactataatgtgtgtgttctgcagt--------------------------------------------
|||||  |||| || || |     || || ||| ||||||| |||||||||||||||||| | || || || ||||||||||| |  || |    ||     |  |  | | |   |   || | | |  |  ||  || ||  | || | |  || |  |   |  ||  |||                                               
GAAGACATTGAACTCATGGCCAGTTTGGGTTTCCGTGCTTATAGATTTTCTATATCTTGGCCACGCATATTTCCTGgtatgttgagctaatcacatgagagcttcacatacaaaaattgcacatgccatgcatttccagatatatatg-acatcctttttttcatcagtaatgcttcagatcatctttctatgattgagactaattttatcatgcctgcag

upper sequence: AT5G36890.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G16220.1 (Glycine max), 5'ss of exon 4
GAAGATGTTGATCTTATAGGACAATTAGGATTCGGTGCTTACAGATTTTCTATATCTTGGTCTCGAATTTTCCCTGgtatgtttaaatatattgtgttgtttatagttgctactttgttacttactaatccattttagttaattttggataaactataatgtgtgtgttctgcagt----
|||||| ||||||||||||   | || ||||| | |||||| |||||||| || ||||||||||| |||||||| ||||||||| | ||  |  ||   |||| |  || |   |   || ||| |  |   || ||  | | |||  ||   | || |    ||  | ||| |      
GAAGATATTGATCTTATAGCCAAGTTGGGATTTGATGCTTATAGATTTTCAATTTCTTGGTCTCGGATTTTCCCCGgtatgttttattac-taatgaattttaaatctgttttctatatagttagttgtt--ttataaatgaatttccatgt-ccatgagtcatgaatcctgaaagtttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86058097|gb|DR353854.1|DR353854
EST:     AGGATTCGGTGCTTACAGATTTTCTATATCTTGGTCTCGAATTTTCCCTG                         ATGGCCTGGGAACTGAAGTCAATGAAGAAGGCATTGCTTTCTACAACGATC
genomic: AGGATTCGGTGCTTACAGATTTTCTATATCTTGGTCTCGAATTTTCCCTGgtatgtttaa ... acttttctagATGGCCTGGGAACTGAAGTCAATGAAGAAGGCATTGCTTTCTACAACGATC
EST: gi|86058095|gb|DR353852.1|DR353852
EST:     AGGATTCGGTGCTTACAGATTTTCTATATCTTGGTCTCGAATTTTCCCTG                         ATGGCCTGGGAACTGAAGTCAATGAAGAAGGCATTGCTTTCTACAACGATC
genomic: AGGATTCGGTGCTTACAGATTTTCTATATCTTGGTCTCGAATTTTCCCTGgtatgtttaa ... acttttctagATGGCCTGGGAACTGAAGTCAATGAAGAAGGCATTGCTTTCTACAACGATC