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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTATGATCCTGAGGATAAGAACCATATCGTTCGCATATACGACTACTTCTTACATCAAAGTCATTTGTGCATATGCTTTGAACTTCTAGACATGAATCTgtaagttctatgactgaagtattattctccttctatctttctatgtgtttatcctctgatttccttcatgcaaactgtataaagtgtttgttggtgacaattctattgtccttcgtaatatatggtctcag

Basic information

species Arabidopsis thaliana
transcript AT5G35980.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G35980.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G18110.1 (Glycine max), 5'ss of exon 6
AGTATGATCCTGAGGATAAGAACCATATCGTTCGCATATACGACTACTTCTTACATCAAAGTCATTTGTGCATATGCTTTGAACTTCTAGACATGAATCTgtaagttcta---tgactgaagtattattctccttct--atctttctatgtgtttatcctctgatttccttcatgcaaactgtataaagtgtttgttggtgacaat-tctattgtccttcgtaatat-atggtctcag-----------------------------------------------------
|||||||||||||||||||| | || || ||||| ||||| || || ||  || ||||| | ||||||||||| ||||||||| | || ||||  ||  ||||||||||    |   | || | || ||  | ||    || | ||  || |           ||||    | || |   |||  |   | |       | |  || | |  | |  || | ||| |     ||  ||                                                     
AGTATGATCCTGAGGATAAGCATCACATTGTTCGTATATATGATTATTTTGTATATCAACGACATTTGTGCATTTGCTTTGAATTGCTGGACACAAACTTgtaagttctggacttttttaaattttttttccatttagaatttgtcattgagaacgagactgcatttaaagcttgaatggtgttcacgttctactgaactaaagatatttggtttgttttgcaatgttgctatcctagatttgttattttctctcttgtctattttagtgttgacattgtgtagtatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86064112|gb|DR359869.1|DR359869
EST:     TTACATCAAAGTCATTTGTGCATATGCTTTGAACTTCTAGACATGAATCT                         GTATGAGCTCATAAAGATAAATCAATTCAGAGGCCTATCATTAAGCATAGT
genomic: TTACATCAAAGTCATTTGTGCATATGCTTTGAACTTCTAGACATGAATCTgtaagttcta ... atggtctcagGTATGAGCTCATAAAGATAAATCAATTCAGAGGCCTATCATTAAGCATAGT