1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAGgtaagagagaccaacactaaccagaaatctacatttgctattgttatgtttgtgcctgttttgtcttaacgatatttgcattgttttgtgagtgtag
species | Arabidopsis thaliana |
transcript | AT5G28060.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG ACCAAGGCTGGTGATAEST: gi|125294412|gb|EL308497.1|EL308497
genomic: AGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAGgtaagagaga ... gtgagtgtagACCAAGGCTGGTGATA
EST: AGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG ACCAAGGCTGGTGATACCAAGAAGAAGTAAGACGTTTGAAGEST: gi|124933481|gb|EL010634.1|EL010634
genomic: AGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAGgtaagagaga ... gtgagtgtagACCAAGGCTGGTGATACCAAGAAGAAGTAAGACGTTTGAAG
EST: AGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG ACCAAGGCTGGTGATACCAAGAAGAAGTAAGACGEST: gi|116424160|gb|EG466752.1|EG466752
genomic: AGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAGgtaagagaga ... gtgagtgtagACCAAGGCTGGTGATACCAAGAAGAAGTAAGACG
EST: ATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG ACCAAGGCTGGTGATACCAAGAAGAAGTAAGACGTTTGAAGAGGACAAAAGEST: gi|125030490|gb|EL102759.1|EL102759
genomic: ATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAGgtaagagaga ... gtgagtgtagACCAAGGCTGGTGATACCAAGAAGAAGTAAGACGTTTGAAGAGGACAAAAG
EST: GGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG ACCAAGGCTGGTGATACCAAGAAGAAGTAAGACGTTTGAAGAAGGACGAAAEST: gi|125168664|gb|EL193193.1|EL193193
genomic: GGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAGgtaagagaga ... gtgagtgtagACCAAGGCTGGTGATACCAAGAAGAAGTAAGACGTTTGAAGA-GGAC-AAA
EST: AGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG ACCAAGGCTGGTGATACCAAGAAGAAGTAAGACGTTTGAAGAGGACAAAAGEST: gi|164144262|gb|ES196463.1|ES196463
genomic: AGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAGgtaagagaga ... gtgagtgtagACCAAGGCTGGTGATACCAAGAAGAAGTAAGACGTTTGAAGAGGACAAAAG
EST: AGATCAAGGAGAGGAAGAACAGGGCTAAGAAGATCCGTGGTGTTAAGAAG ACCAAGGCTGGTGATEST: gi|124981058|gb|EL053952.1|EL053952
genomic: AGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAGgtaagagaga ... gtgagtgtagACCAAGGCTGGTGAT
EST: AGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG ACCAAGGCTGGTGATACCAAGAAGEST: gi|86084565|gb|DR380324.1|DR380324
genomic: AGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAGgtaagagaga ... gtgagtgtagACCAAGGCTGGTGATACCAAGAAG
EST: AGATCAAGGAGAGGAAAAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG ACCAAGGCTGGTGATGCCAAGAAGAAGTAAGACGTTTGAAGAGGACAGAAGEST: gi|86078425|gb|DR374182.1|DR374182
genomic: AGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAGgtaagagaga ... gtgagtgtagACCAAGGCTGGTGATACCAAGAAGAAGTAAGACGTTTGAAGAGGACAAAAG
EST: AGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG ACCAAGGCTGGTGATGCCAAGAAGAAGTAAGACGTTTGAAGAGGACAGAAGEST: gi|116424161|gb|EG466753.1|EG466753
genomic: AGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAGgtaagagaga ... gtgagtgtagACCAAGGCTGGTGATACCAAGAAGAAGTAAGACGTTTGAAGAGGACAAAAG
EST: ATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG ACCAAGGCTGGTGATACCAAGAAGAAGTAAGACGTTTGAAGAGGACAAAAGEST: gi|164033240|gb|ES112106.1|ES112106
genomic: ATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAGgtaagagaga ... gtgagtgtagACCAAGGCTGGTGATACCAAGAAGAAGTAAGACGTTTGAAGAGGACAAAAG
EST: AGATCAAGGAGAGGAAGAACAGGGCTAAGAAGATCCGTGGTGTTAAGAAG ACCAAGGCTGGTGEST: gi|86081226|gb|DR376983.1|DR376983
genomic: AGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAGgtaagagaga ... gtgagtgtagACCAAGGCTGGTG
EST: AGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG ACCAAGGCTGGTGATGCCAAGAAGAAGTAAGACGTTTGAAGAGGACAGAAGEST: gi|124867524|gb|EH951961.1|EH951961
genomic: AGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAGgtaagagaga ... gtgagtgtagACCAAGGCTGGTGATACCAAGAAGAAGTAAGACGTTTGAAGAGGACAAAAG
EST: ATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAG ACCAAGGCTGGTGATACCAAGAAGAAGTAAGACGTTTGAAGAGGACAAA
genomic: ATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAGgtaagagaga ... gtgagtgtagACCAAGGCTGGTGATACCAAGAAGAAGTAAGACGTTTGAAGAGGACAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGGACTTGACACCAAGATTGAGAAATCAAGGAAACAGATCAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGTGGTGTTAAGAAGgtaagagagaccaacactaaccagaaatctacatttgctattgttatgtttgtgcctgttttgtcttaacgatatttgcattgttttgtgagtgtag
- - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG