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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGATCTAGACGTGATGGAAGAGCTTGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacacattattgatccatatatgtatatagtaacattggattgtgattgtttggaagagtattaaatatacaatatataaatgagcag

Basic information

species Arabidopsis thaliana
transcript AT5G25980.3
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116450039|gb|EG492631.1|EG492631
EST:     TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
EST: gi|47831614|gb|CK121298.1|CK121298
EST:     TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
EST: gi|47828775|gb|CK118459.1|CK118459
EST:     TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
EST: gi|116459414|gb|EG502006.1|EG502006
EST:     TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
EST: gi|116459426|gb|EG502018.1|EG502018
EST:     TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
EST: gi|116410417|gb|EG453009.1|EG453009
EST:     TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
EST: gi|116477703|gb|EG520295.1|EG520295
EST:     TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
EST: gi|125011536|gb|EL083805.1|EL083805
EST:     CTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: CTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
EST: gi|116400371|gb|EG442963.1|EG442963
EST:     TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
EST: gi|124874145|gb|EH955790.1|EH955790
EST:     TCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTA
genomic: TCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTA
EST: gi|116410415|gb|EG453007.1|EG453007
EST:     TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
EST: gi|116459408|gb|EG502000.1|EG502000
EST:     TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
EST: gi|47829862|gb|CK119546.1|CK119546
EST:     TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
EST: gi|116439048|gb|EG481640.1|EG481640
EST:     TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
EST: gi|124940542|gb|EL016984.1|EL016984
EST:     TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
EST: gi|47828808|gb|CK118492.1|CK118492
EST:     TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
EST: gi|116439115|gb|EG481707.1|EG481707
EST:     TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
EST: gi|47828824|gb|CK118508.1|CK118508
EST:     TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
EST: gi|125197735|gb|EL212689.1|EL212689
EST:     TTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: TTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
EST: gi|116477702|gb|EG520294.1|EG520294
EST:     TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
EST: gi|125222035|gb|EL236120.1|EL236120
EST:     TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
EST: gi|116444211|gb|EG486803.1|EG486803
EST:     TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
EST: gi|116410414|gb|EG453006.1|EG453006
EST:     TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
EST: gi|125183255|gb|EL198243.1|EL198243
EST:     TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAAGGAAAGAGGAGTAGGGGAAT
genomic: TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAA-GGAAAGAGGAGTAGGGGAAT
EST: gi|47829256|gb|CK118940.1|CK118940
EST:     TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
EST: gi|116410418|gb|EG453010.1|EG453010
EST:     TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: TGGAGTTAAAGGCTACAGATTCTCCTTTGCGTGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
EST: gi|125043406|gb|EL115675.1|EL115675
EST:     TGGTCAAGAATCCTTCCAA                         AAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG
genomic: TGGTCAAGAATCCTTCCAAgtatgtacac ... aaatgagcagAAGGAAAGAGGAGTAGGGGAATCAACGAAGATGGTATTAACTACTACAGCG