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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAAGTGTTGCTTCCATGGCTTGGGCTAAGGTCACTGGCTCCTTCGATTATGGCTCCAAAGTTTGTTACTTTATCGCCATTTTCCTCTATTTCTCATTGgtacgttttacatataacttagctgtatatatattccttcttcagaaaagtatttactaatacaaattttccctttctttgatttatag

Basic information

species Arabidopsis thaliana
transcript AT5G24030.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G24030.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G23220.1 (Glycine max), 5'ss of exon 2
TCCAAGTGTTGCTTCCATGGCTTGGGCTAAGGTCACTGGCTCCTTCGATTATGGCTCCAAAGTTTGTTACTTTATCGCCATTTTCCTCTATTTCTCATTGgtacgttttacatataacttagctgtatatatattccttcttcagaaaagtatttactaatacaaattttccctttctttgatttatag-------------
 |||||||||||||||||||||||||| ||  |    || |||||||||||||| ||     ||   || || || ||| | || || ||||||||||||||| ||| |   ||| | ||         | ||||     |    |    |||||| | | ||  ||       ||  ||     ||               
ACCAAGTGTTGCTTCCATGGCTTGGGCCAACATTCAGGGTTCCTTCGATTATGGATCTCGGATTGCCTATTTCATTGCCCTCTTTCTTTATTTCTCATTGgtaagttattt-tatcattttttcacccttgtattgaaa-taggaatggttatttaatcacacgtataccttagttggttagaaaattaaacttcacctacg