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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTCCCATGACCTACTTGCTCCTGTCAAAACCAGCAAAGGGTGTTGAAAAATCATTCTGCCTTCTTTCTCTGATTGACAAGATTCTTCCTGTCTACAAgtaagaataatattacgccaactgtgacgcttttagaaattagctagaccaaaataaattcaaaagatacaatttcatttggatagtgctcgaaaccataactggtttatgtggcatttattttggcag

Basic information

species Arabidopsis thaliana
transcript AT5G20980.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G20980.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G15140.2 (Glycine max), 5'ss of exon 4
TTGGTCCCATGACCTACTTGCTCCTGTCAAAACCAGCAAAGGGTGTTGAAAAATCATTCTGCCTTCTTTCTCTGATTGACAAGATTCTTCCTGTCTACAAgtaagaataatattacgccaactgtgacgcttttagaaattagctagaccaaaataaattcaaaagatacaatttcatttggatagtgctcgaaaccataactggtttatgtggcatttattttggcag
| || ||  |  |||||||| | |||||||||||||| ||||||||||| || ||||| | ||||||||| || ||||||||||| ||||||||||||| |||    |  |  ||    |  |  |||| | ||   ||| |  || |  ||| |   ||| |   ||||    | ||||  || ||                                          
TGGGACCTGTATCCTACTTGTTGCTGTCAAAACCAGCTAAGGGTGTTGAGAAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAGgta----tggtcctaaagtagtta-gacgttcttg--aatca--tatattaaagttgcttctatc-atacttcgttattt--attgtag----------------------------------------

upper sequence: AT5G20980.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA04G30350.1 (Glycine max), 5'ss of exon 4
TTGGTCCCATGACCTACTTGCTCCTGTCAAAACCAGCAAAGGGTGTTGAAAAATCATTCTGCCTTCTTTCTCTGATTGACAAGATTCTTCCTGTCTACAAgtaagaataatattacgccaactgtgacgcttttagaaattagctagaccaaaataaattcaaaagatacaatttcatttgg-atagtgctcgaaaccataactggtttatgtggcatttattttggcag
| || ||  |  | |||||| | |||||||||||||| ||||||||||| || ||||| | ||||||||| || ||||||||||| ||||||||||||| |||    |  | |||    |   ||||    ||    ||| |  || || ||| |   |||||   ||||  | | ||||    |||                                           
TGGGACCTGTTTCTTACTTGTTGCTGTCAAAACCAGCTAAGGGTGTTGAGAAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAGgta----tggtcttaaagta---gtgatttgttcttgaatca--tatactaaagttgcttcaatc-atactttgttatttaatgtag-------------------------------------------