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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATGTTGCATCTGCAAGGAGAATCTAGTTATTGGCGACAAGATGCAGGAATTGCCATGCAAGCACACATTTCACCCTCCTTGCCTAAAGCCTTGGCTGgtataaaaaaaaaaatcccattctttcaagcttactagtaagtaagaacataaagcttatgctcatattgttttatggcag

Basic information

species Arabidopsis thaliana
transcript AT5G20910.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G20910.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA14G12380.1 (Glycine max), 5'ss of exon 4
AGAATGTTGCATCTGCAAGGAGAATCTAGTTATTGGCGACAAGATGCAGGAATTGCCATGCAAGCACACATTTCACCCTCCTTGCCTAAAGCCTTGGCTGgtataaaaaaaaaaatcccat-tctttc---aagcttactagtaagtaagaacataaagcttatgctcatattgttttatggcag----------------------------------------
||| |||   || |||| ||||||  | ||| |    ||||| ||||| || |||||||||||||||||||| ||||| || || |||||||| ||||||||||       ||   | ||  ||| |    ||  |||        |    | || ||  | ||||  || || || ||||| |                                         
AGAGTGTGCAATTTGCAGGGAGAACTTGGTTTTAAATGACAAAATGCAAGAGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTGgtattgtccctaactccacagatctattggaaattttatgttcttcttttgaaatcaacttcatgc--attttattctatggaattcttgaagaaatgacatgattagatataagatgtgttcag

upper sequence: AT5G20910.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA17G33630.1 (Glycine max), 5'ss of exon 4
AGAATGTTGCATCTGCAAGGAGAATCTAGTTATTGGCGACAAGATGCAGGAATTGCCATGCAAGCACACATTTCACCCTCCTTGCCTAAAGCCTTGGCTGgtataaaaaaaaaaatcccat-tctttc---aagcttactagtaagtaagaacataaagcttatgctcatattgttttatggcag-------------------------------------------------------------
||| |||   || |||| ||||||  | ||| |    ||||| ||||| || |||||||||||||||||||| ||||| || || |||||||| ||||||||||       ||   | ||  ||| |    ||  |||        |    | || ||  | ||||  || || || ||||| |                                                              
AGAGTGTGCTATTTGCAGGGAGAACTTGGTTTTAAATGACAAAATGCAAGAGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTGgtattgtccctaactccacagatctattggaaattttatgttcttcttttgatatcaacttcatgc--attttattctatggaattcttttaagaaatgacatgattagatataaggtgtgttcaattttatcctttatgtggcag

upper sequence: AT5G20910.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA14G12380.2 (Glycine max), 5'ss of exon 4
AGAATGTTGCATCTGCAAGGAGAATCTAGTTATTGGCGACAAGATGCAGGAATTGCCATGCAAGCACACATTTCACCCTCCTTGCCTAAAGCCTTGGCTGgtataaaaaaaaaaatcccat-tctttc---aagcttactagtaagtaagaacataaagcttatgctcatattgttttatggcag------------------------------------------------------------
||| |||   || |||| ||||||  | ||| |    ||||| ||||| || |||||||||||||||||||| ||||| || || |||||||| ||||||||||       ||   | ||  ||| |    ||  |||        |    | || ||  | ||||  || || || ||||| |                                                             
AGAGTGTGCAATTTGCAGGGAGAACTTGGTTTTAAATGACAAAATGCAAGAGTTGCCATGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTGgtattgtccctaactccacagatctattggaaattttatgttcttcttttgaaatcaacttcatgc--attttattctatggaattcttgaagaaatgacatgattagatataagatgtgttcagttttatcctttatgtggcag

upper sequence: AT5G20910.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv04s0008g02290.t01 (Vitis vinifera), 5'ss of exon 4
AGAATGTTGCATCTGCAAGGAGAATCTAGTTATTGGCGACAAGATGCAGGAATTGCCATGCAAGCACACATTTCACCCTCCTTGCCTAAAGCCTTGGCTGgtataaaaaaaaaaatcccattctt-tcaagcttactagtaagtaagaacataaagcttatgctcatattgttttatggcag-----------------------------------------------
|||||||   || |||||||||||  | ||| | |  ||||| ||||| || ||||| ||||||||||||||||||||||| ||  ||||||| |||||||||       |   | | ||| ||| |  | | || || ||   |||||  | |    |   || ||  |      || ||                                                
AGAATGTGCTATTTGCAAGGAGAACTTCGTTGTAGATGACAAAATGCAAGAGTTGCCCTGCAAGCACACATTTCACCCTCCCTGTTTAAAGCCGTGGCTGgta-------atgtacctcatccttattcatcataatattagagaagaaactcagagctcctcttatgcttccacttgccatttgtctaaaatttggctttctcgttcctggacatttcgctttggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164022660|gb|ES135199.1|ES135199
EST:     TAAAGCCTTGGCTG                         GACGAGCATAACTCTTGCCCTATATGCCGCCATGAATTACCAACAGACGAT
genomic: TAAAGCCTTGGCTGgtataaaaaa ... tttatggcagGACGAGCATAACTCTTGCCCTATATGCCGCCATGAATTACCAACAGACGAT
EST: gi|164162355|gb|ES018581.1|ES018581
EST:     AGCCTTAGGCTG                         GACGAGCATAACTCTTGCCCTATATGCCGCCATGAATTACCAACAGACGA
genomic: AGCCTT-GGCTGgtataaaaaa ... tttatggcagGACGAGCATAACTCTTGCCCTATATGCCGCCATGAATTACCAACAGACGA