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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATTGAACTGCCAATCAAGCATCCTGAATTGTTTGAGTCTCTTGGAATTGCGCAGCCAAAGgtacacttgaatttcaaagcttatctatattgtgacgctgctaagtggatttcgaactgattgcttctccctctcttttaag

Basic information

species Arabidopsis thaliana
transcript AT5G20000.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G20000.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G107362_T04 (Zea mays), 5'ss of exon 4
GTCATTGAACTGCCAATCAAGCATCCTGAATTGTTTGAGTCTCTTGGAATTGCGCAGCCAAAGgtacacttgaatttc-aaagcttatctatattgtgacgctgctaagtggatttcgaactgattgcttctccctctcttttaag
|||||||| || |||||||| ||||| ||| ||||||||   |||||||||||||| ||||||||    ||   |||   |||   ||||  |   |        ||  || |  | |||  ||  | |  |   | | ||| |  
GTCATTGAGCTTCCAATCAAACATCCGGAACTGTTTGAGAGCCTTGGAATTGCGCAACCAAAGgtttgttttcttttttgaagaccatcttaaccttttgaactttacatgtaggtggaaaagacggatcttgtttgtttttcag-

upper sequence: AT5G20000.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA07G00420.1 (Glycine max), 5'ss of exon 4
GTCATTGAACTGCCAATCAAGCATCCTGAATTGTTTGAGTCTCTTGGAATTGCGCAGCCAAAGgtacacttgaatttcaaagcttatctatattgtgacgctgctaagtggatttcgaactgattgcttctccctctcttt--taag-------------------
|||||||| || |||||||| ||||||||  |||||||   |||||||||||| || |||||||||   |   ||||    |  |  ||| ||| || |  | |  |   |      |  || ||| || |   ||| |||  | ||                   
GTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTGCACAACCAAAGgtagtttctcattttggggtgttgctaaattttgtcattcc--atcagcagcacacttggttgtttatttttctgtttgctgagtctcttgaacacatcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164201077|gb|ES026000.1|ES026000
EST:     CATCCTGAATTGTTTGAGTCTCTTGGAATTGCGCAGCCAAAG                         GGTGTGTTGTTATACGGTCCACCTGGAACTGGGAAGACACTATTGGCTCGG
genomic: CATCCTGAATTGTTTGAGTCTCTTGGAATTGCGCAGCCAAAGgtacacttga ... ctcttttaagGGTGTGTTGTTGTACGGTCCACCTGGAACTGGGAAGACACTATTGGCTCGG
EST: gi|164231170|gb|ES041092.1|ES041092
EST:     CAATCAAGCATCCTGAATTGTTTGAGTCTCTTGGAATTGCGCAGCCAAAG                         GGTGTGTTGTTGTACGGTCC
genomic: CAATCAAGCATCCTGAATTGTTTGAGTCTCTTGGAATTGCGCAGCCAAAGgtacacttga ... ctcttttaagGGTGTGTTGTTGTACGGTCC