1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTCTCGGGTCAAGGAATACATTCCCATTGTTGGTATTTCCGATTTTAACAAGTTAAGCGCCAAGCTCATCTTAGGTGCTGACAGgtaatcatctatactgtttatttgttatcttttcatttgtgttttgctttgtttctcttgtgacataatatcccctttagttgataaagtttaatattttataaatattcttgttttgttggcag
species | Arabidopsis thaliana |
transcript | AT5G19550.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTTCCGATTTTAACAAGTTAAGCGCCAAGCTCATCTTAGGTGCTGACAG TCCTGCGATTACAGAAAGTAGAGTTACTACAGTCCAGTGCTTGTCTGGTACEST: gi|125297732|gb|EL311817.1|EL311817
genomic: ATTTCCGATTTTAACAAGTTAAGCGCCAAGCTCATCTTAGGTGCTGACAGgtaatcatct ... ttgttggcagTCCTGCGATTACAGAAAGTAGAGTTACTACAGTCCAGTGCTTGTCTGGTAC
EST: ATTTCCGATTTTAACAAGTTAAGCGCCAAGCTCATCTTAGGTGCTGACAG TCCTGCGATTACAGAAAGTAGAGTTACTACAEST: gi|116439128|gb|EG481720.1|EG481720
genomic: ATTTCCGATTTTAACAAGTTAAGCGCCAAGCTCATCTTAGGTGCTGACAGgtaatcatct ... ttgttggcagTCCTGCGATTACAGAAAGTAGAGTTACTACA
EST: ATTTCCGATTTTAACAAGTTAAGCGCCAAGCTCATCTTAGGTGCTGACAG TCCTGCGATTACAGAAAGTAGAGTTACTACAGTCCAGTGCTTGTCTGGTACEST: gi|116442567|gb|EG485159.1|EG485159
genomic: ATTTCCGATTTTAACAAGTTAAGCGCCAAGCTCATCTTAGGTGCTGACAGgtaatcatct ... ttgttggcagTCCTGCGATTACAGAAAGTAGAGTTACTACAGTCCAGTGCTTGTCTGGTAC
EST: ATTTCCGATTTTAACAAGTTAAGCGCCAAGCTCATCTTAGGTGCTGACAG TCCTGCGATTACAGAAAGTAGAGTTACTACAGTCCAGTGCTCGTCTGGTAC
genomic: ATTTCCGATTTTAACAAGTTAAGCGCCAAGCTCATCTTAGGTGCTGACAGgtaatcatct ... ttgttggcagTCCTGCGATTACAGAAAGTAGAGTTACTACAGTCCAGTGCTTGTCTGGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTCGGGTCAAGGAATACATTCCCATTGTTGGTATTTCCGATTTTAACAAGTTAAGCGCCAAGCTCATCTTAGGTGCTGACAGgtaatcatctatactgtttatttgttatcttttcatttgtgttttgctttgtttctcttgtgacataatatcccctttagttgataaagtttaatattttataaatattcttgttttgttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA