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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATGGAAATTTGGAGCAATGGCTCCGTGGAGACAATCAAAATCATGAGTATCTTACATGGGAGGCACGAGTGAAAATTCTTATTGGGACAGCCAAAGCgtaagtcttgtggcagctatatgattttgttttcttgattgtgttttttctttattctcatctgaggcgatgggtggtgacgcag

Basic information

species Arabidopsis thaliana
transcript AT5G18500.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G18500.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os01g21960.1 (Oryza sativa), 5'ss of exon 4
ACAATGGAAATTTGGAGCAATGGCTCCGTGGAGACAATCAAAATCATGAGTATCTTACATGGGAGGCACGAGTGAAAATTCTTATTGGGACAGCCAAAGCgtaagt----cttgtggcagctatatgattttgtt--ttcttgattgtgttttttctttattctca------tctgaggcgatgggtggtgacgcag---
||||||||||  | ||||||||||| | |||||  |      | | ||  |  |||||||||||||| || || || |||||| |||||||||| |||||||||||    | ||  |  |  || |  ||||| |  | ||| |   | |||||  | |||| |||        |  ||| |||     | | |      
ACAATGGAAACCTAGAGCAATGGCTTCATGGAGCTATGAGTCACCGTGGTTCCCTTACATGGGAGGCCCGTGTAAAGATTCTTCTTGGGACAGCTAAAGCgtaagttcttcctggagatgtcatttctttttgctagtacttcaccatatttttgttatattgtcagtccgccttagggcaatgtaatcttatgttccta