1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACAATGGCTTGGATTCTTGATGAATACTCTAAGTTTCATGGATACTCGCCTGCAGTTGTGACTGGAAAACCCATTgtaagtaaagaataatcacaatcttgttttgctaatgactggtttaaccacctgaatgtttaatgatgtttatgaaccag
species | Arabidopsis thaliana |
transcript | AT5G18170.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACTCTAAGTTTCATGGATACTCGCCTGCAGTTGTGACTGGAAAACCCATT GATCTTGGTGGATCGCTAGGGAGAGACEST: gi|116386886|gb|EG429478.1|EG429478
genomic: ACTCTAAGTTTCATGGATACTCGCCTGCAGTTGTGACTGGAAAACCCATTgtaagtaaag ... tatgaaccagGATCTTGGTGGATCGCTAGGGAGAGAC
EST: ACTCTAAGTTTCATGGATACTCGCCTGCAGTTGTGACTGGAAAACCCATT GATCTTGGTGGATCGCTAGGGAGAGACGCGGCTACTGGAAGAGGAGTGATGEST: gi|125086090|gb|EL145686.1|EL145686
genomic: ACTCTAAGTTTCATGGATACTCGCCTGCAGTTGTGACTGGAAAACCCATTgtaagtaaag ... tatgaaccagGATCTTGGTGGATCGCTAGGGAGAGACGCGGCTACTGGAAGAGGAGTGATG
EST: ACTCTAAGTTTCATGGATACTCGCCTGCAGTTGTGACTGGAAAACCCATT GATCTTGGTGGATCGCTAGGG
genomic: ACTCTAAGTTTCATGGATACTCGCCTGCAGTTGTGACTGGAAAACCCATTgtaagtaaag ... tatgaaccagGATCTTGGTGGATCGCTAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAATGGCTTGGATTCTTGATGAATACTCTAAGTTTCATGGATACTCGCCTGCAGTTGTGACTGGAAAACCCATTgtaagtaaagaataatcacaatcttgttttgctaatgactggtttaaccacctgaatgtttaatgatgtttatgaaccag
- - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - CTGCAG