1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GATGGTGCCAACTGCAATGGAGGAAAGTGGATCATACGTTTCTCAAAAGTTGTATCTGCTCGCTTCTGGGAGGATCTGgtgagttttattttcttgtgggcactactattggagtattgacacctttctactttattcaaaagaaacccttttgtcaatgttatttataatccattttacatacttagggtctgagaatcatgttaaatactcttccgtttatttgttttcttcag
species | Arabidopsis thaliana |
transcript | AT5G18110.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGATCATACGTTTCTCAAAAGTTGTATCTGCTCGCTTCTGGGAGGATCTG CTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGGEST: gi|116398425|gb|EG441017.1|EG441017
genomic: GGATCATACGTTTCTCAAAAGTTGTATCTGCTCGCTTCTGGGAGGATCTGgtgagtttta ... ttttcttcagCTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGG
EST: GGATCATACGTTTCTCAAAAGTTGTATCTGCTCGCTTCTGGGAGGATCTG CTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGGEST: gi|116398424|gb|EG441016.1|EG441016
genomic: GGATCATACGTTTCTCAAAAGTTGTATCTGCTCGCTTCTGGGAGGATCTGgtgagtttta ... ttttcttcagCTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGG
EST: GGATCATACGTTTCTCAAAAGTTGTATCTGCTCGCTTCTGGGAGGATCTG CTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGGEST: gi|125027542|gb|EL099811.1|EL099811
genomic: GGATCATACGTTTCTCAAAAGTTGTATCTGCTCGCTTCTGGGAGGATCTGgtgagtttta ... ttttcttcagCTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGG
EST: TGGGAGGATCTG CTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGGEST: gi|116398423|gb|EG441015.1|EG441015
genomic: TGGGAGGATCTGgtgagtttta ... ttttcttcagCTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGG
EST: GGATCATACGTTTCTCAAAAGTTGTATCTGCTCGCTTCTGGGAGGATCTG CTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGGEST: gi|125271892|gb|EL285977.1|EL285977
genomic: GGATCATACGTTTCTCAAAAGTTGTATCTGCTCGCTTCTGGGAGGATCTGgtgagtttta ... ttttcttcagCTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGG
EST: GGATCATACGTTTCTCAAAAGTTGTATCTGCTCGCTTCTGGGAGGATCTG CTTCTTGCGTTGGTAGGCGACCAGCTTGATEST: gi|164152332|gb|ES101068.1|ES101068
genomic: GGATCATACGTTTCTCAAAAGTTGTATCTGCTCGCTTCTGGGAGGATCTGgtgagtttta ... ttttcttcagCTTCTTGCGTTGGTAGGCGACCAGCTTGAT
EST: TGGGAGGATCTG CTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGG
genomic: TGGGAGGATCTGgtgagtttta ... ttttcttcagCTTCTTGCGTTGGTAGGCGACCAGCTTGATGATGCTGATAACATATGTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGGTGCCAACTGCAATGGAGGAAAGTGGATCATACGTTTCTCAAAAGTTGTATCTGCTCGCTTCTGGGAGGATCTGgtgagttttattttcttgtgggcactactattggagtattgacacctttctactttattcaaaagaaacccttttgtcaatgttatttataatccattttacatacttagggtctgagaatcatgttaaatactcttccgtttatttgttttcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT