1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CACATTTGTCGGTTTTCTGAAGAGCAAAGATTCAGGAGATGGAACTGAGCAAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAATgtaagctcttttggttttgatctcttgtatatccttaagtaatagttgtgatgatcttagagtagattattctggctgttgattgaaacatatatttacttctctatcttccataatgtgaag
species | Arabidopsis thaliana |
transcript | AT5G16710.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAA-GACAAT GGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGATTTGTCCTTGGCAEST: gi|164180173|gb|ES070023.1|ES070023
genomic: AAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAATgtaagctctt ... taatgtgaagGGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGATTTGTCCTTGGCA
EST: AAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAAT GGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGAEST: gi|116480640|gb|EG523232.1|EG523232
genomic: AAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAATgtaagctctt ... taatgtgaagGGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGA
EST: AAGTTTTGTTGGACGAGCTTACTACATTCAACGATTATATCAAGGACAAT GGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGATTTGTCCTTGGCAEST: gi|86076765|gb|DR372522.1|DR372522
genomic: AAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAATgtaagctctt ... taatgtgaagGGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGATTTGTCCTTGGCA
EST: AAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAAT GGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGATTTGTCCTTGGCAEST: gi|116480635|gb|EG523227.1|EG523227
genomic: AAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAATgtaagctctt ... taatgtgaagGGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGATTTGTCCTTGGCA
EST: AAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAAT GGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGATTTGTCCTTGGCAEST: gi|116480632|gb|EG523224.1|EG523224
genomic: AAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAATgtaagctctt ... taatgtgaagGGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGATTTGTCCTTGGCA
EST: AAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAAT GGCCCTTTCATAAATGGAGAGAAGATCGCGGCAGCAGATTTGTCCTTGGCAEST: gi|116480636|gb|EG523228.1|EG523228
genomic: AAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAATgtaagctctt ... taatgtgaagGGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGATTTGTCCTTGGCA
EST: AAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAAT GGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGATTTGTCCTTGGCAEST: gi|116480645|gb|EG523237.1|EG523237
genomic: AAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAATgtaagctctt ... taatgtgaagGGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGATTTGTCCTTGGCA
EST: AAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAAT GGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGATTTGTCCTTGGCAEST: gi|116480622|gb|EG523214.1|EG523214
genomic: AAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAATgtaagctctt ... taatgtgaagGGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGATTTGTCCTTGGCA
EST: AAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAAT GGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGATTTGTCCTTGGCAEST: gi|116480638|gb|EG523230.1|EG523230
genomic: AAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAATgtaagctctt ... taatgtgaagGGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGATTTGTCCTTGGCA
EST: AAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAAT GGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGATTTGTCCTTGGCAEST: gi|124784041|gb|EH873813.1|EH873813
genomic: AAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAATgtaagctctt ... taatgtgaagGGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGATTTGTCCTTGGCA
EST: TTTTGTTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAAT GGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGATTTGTCCTTGGCAEST: gi|116480643|gb|EG523235.1|EG523235
genomic: TTTTG-TTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAATgtaagctctt ... taatgtgaagGGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGATTTGTCCTTGGCA
EST: AAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAAT GGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGATTTGTCCTTGGCAEST: gi|116480631|gb|EG523223.1|EG523223
genomic: AAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAATgtaagctctt ... taatgtgaagGGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGATTTGTCCTTGGCA
EST: AAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAAT GGCCCTTTCATAAATGGAGAGAAGATCGCGGCAGCAGATTTGTCCTTGGCA
genomic: AAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAATgtaagctctt ... taatgtgaagGGCCCTTTCATAAATGGAGAGAAGATCTCGGCAGCAGATTTGTCCTTGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACATTTGTCGGTTTTCTGAAGAGCAAAGATTCAGGAGATGGAACTGAGCAAGTTTTGTTGGATGAGCTTACTACATTCAACGATTATATCAAGGACAATgtaagctcttttggttttgatctcttgtatatccttaagtaatagttgtgatgatcttagagtagattattctggctgttgattgaaacatatatttacttctctatcttccataatgtgaag
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