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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGAATGTACACAGATACTGCGCAGAAACTATCAATTAATATAGAATCAAATATCATGCCATGTTCCACAGTTCCCCGCTTCAAATACCTTCCCATAAGgtaagattttcttcttctacatctaacattgtttgtatgtttgtagcttttaaaaaaaattgggaaactagtttctgctatcagaagtcttctttttgacctttttaaaatttgggaaactagtttctgatatcagaagtcttcgtttcgggtcaaatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G16300.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G16300.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv00s0340g00080.t01 (Vitis vinifera), 5'ss of exon 4
ACCGAATGTACACAGATACTGCGCAGAAACTATCAATTAATATAGAATCAAATATCATGCCATGTTCCACAGTTCCCCGCTTCAAATACCTTCCCATAAGgtaagattttcttcttctacatctaacattgtttgtatgtttgtagcttttaaaaaaaattgggaaactagtttctgctatcagaagtcttctttttgacctttttaaaatttgggaaactagtttctgatatcagaagtcttcgtttcgggtcaaatgcag
| || ||||| || ||||||| ||||||| |  | | ||||  |||||||||||| |||  ||| ||||||||||| ||||||||||| |||||||| ||||| |||| |       | ||| ||  | | |  | |  |   |       || | |  |||| ||| |  || |     |||     |||  || ||   | | | | |   | |                                              
ATCGGATGTATACCGATACTGTGCAGAAAGTGCCTACTAATTCAGAATCAAATATAATGAGATGCTCCACAGTTCCTCGCTTCAAATATCTTCCCATCAGgtatgattat-------tgcatttagaagtttggggaattcaattagaggcaagacactttggcaaattgcttgcc----tca-----ctttgttgtggattgtgtgacaagagag----------------------------------------------