Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGCTGTTGTGATTTACGTTCCATTCAGATTGAGGAAAGCTTTCCGCAAGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttataacattgctctgtctttagtaaatgcctaaacaatagttgtactatctctcttacacactctgccattctttttcattttcttcacag

Basic information

species Arabidopsis thaliana
transcript AT5G16130.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G16130.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os02g21900.1 (Oryza sativa), 5'ss of exon 2
CAAAGCTGTTGTGATTTACGTTCCATTCAGATTGAGGAAAGCTTTCCGCAAGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttataacattgctctgtctttagtaaatgcctaaacaatagttgtactatctctcttacacactctgccattctttttcattttc-----ttcacag--
    |  || |||||  | ||    | |    || | || || |||   || || |||    | || ||||  ||||||||||||||||||||||| ||||| | ||     | | | |||   ||   ||  ||  || | |       | |||    | | | |   |||    || | | |||   |      |  | ||  
----GTGGTAGTGATCCATGTGTTGTACCATCTGTGCAAGGCATTCAAGAAAATCCATGTTAGGCTTGTCAAGGAGCTTGAGAAGAAGTTCAGTGGCAAGgtgaatt----gcgt-gttcttagttgcctacttgtttacatagcttgcatgctagtattttgataatgtctagtgttgtctatcagactgcaaaatctatagct

upper sequence: AT5G16130.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA19G06730.1 (Glycine max), 5'ss of exon 4
CAAAGCTGTTGTGATTTACGTTCCATTCAGATTGAGGAAAGCTTTCCGCAAGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgta--attttataacattgct-ctgtctttagtaaatgcctaaacaatagttgtactatctctcttacacactctgccattctttttcattttcttcacag------------------------------------------------------------------
||| ||||| || || || || || |||||||||||||| || ||||||||||||||||  || || ||||||||| | ||||||||||| ||||| |||||   ||||||   || || | ||    ||  ||      ||    ||  |||   | ||| |   |     |     | | | |||  ||  | |  ||                                                                   
CAAGGCTGTAGTCATCTATGTGCCTTTCAGATTGAGGAAGGCATTCCGCAAGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtattttactgcaatgttacttgacttgatatgaaattagttgatctttg-gttttcttttcaatgtttttccataatgtatttgtttaccctgtcacattaatgtggttatagtgagttcctggatcaactatttgtatcaactgaagattatcaaatgacag

upper sequence: AT5G16130.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G07650.3 (Glycine max), 5'ss of exon 3
CAAAGCTGTTGTGATTTACGTTCCATTCAGATTGAGGAAAGCTTTCCGCAAGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgta--attttataacattgctctgtctttagtaaatgcctaaacaatagttgtactatctctcttacacactctgccattctttttcattttcttcacag-------------------------------------------------------------
||| ||||| || || || || || |||||||||||||| || ||||||||||||||||  || || ||||||||| | ||||||||||| ||||| |||||   ||||||   || ||     |  |  | || |   | | |  | ||| |  | ||  | ||   |  |     |||  ||| |  | ||     |                                                              
CAAGGCTGTAGTCATCTATGTGCCCTTCAGATTGAGGAAGGCATTCCGCAAGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtattttactgcaatgtgacttgatatgaaattagttgatctttggttttcttttcaatgtttttccttaatatatttgtttaccatatcacattaatatggttattgtgagttcctggatcaacaatttgtattaactgaagattattgaatgacag

upper sequence: AT5G16130.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA05G34680.1 (Glycine max), 5'ss of exon 3
CAAAGCTGTTGTGATTTACGTTCCATTCAGATTGAGGAAAGCTTTCCGCAAGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaatttta---taacattgctctgtctttagtaaatgcctaaacaatagttgtactatc-tctcttacacac-tctgccattctttttcattttcttcacag
||| |||||||| ||| | || || | |||||| ||||||| |||||| |||||||||    | || ||||| ||||||||||||||||| ||||| ||||||  |  |   || |||   | || | |   || ||   ||     | |    | | |  |   ||  | || | ||  | | ||  |  |  | | |    
CAAGGCTGTTGTTATTCATGTCCCTTACAGATTAAGGAAAGGTTTCCGTAAGATTCATGTTAGGCTTGTCAGGGAGCTTGAGAAGAAGTTTAGTGGCAAGgtaggtaaagcttagcatatttttgacatctatatattgatatgttctggcatcattttggtagtttgaatacatttgatagtgttcatggtcctttact---

upper sequence: AT5G16130.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G04990.1 (Glycine max), 5'ss of exon 4
CAAAGCTGTTGTGATTTACGTTCCATTCAGATTGAGGAAAGCTTTCCGCAAGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttataacattgctctgtctttagtaaatgcctaaacaatagttgtactatc-tctcttacacactctgccattctttttcattttcttcacag---
||| |||||||| ||| | || || | |||||| ||||||| |||||| |||||||||  | | || ||||| ||||||||||| ||||| ||||| ||||||  |  |    ||     | |    |   |     || |       | || | |  |   ||  | ||  |     | || |  || ||   || ||   
CAAGGCTGTTGTTATTCATGTCCCTTACAGATTAAGGAAAGGTTTCCGTAAGATTCATGTCAGGCTTGTCAGGGAGCTTGAGAAAAAGTTTAGTGGCAAGgtaggtaaagtttatcatatttttggcatctataatttatatgtcttgtatattttggtagtttgaatacatt--tgatattgtggatgtttaccagagaac

upper sequence: AT5G16130.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G07650.2 (Glycine max), 5'ss of exon 5
CAAAGCTGTTGTGATTTACGTTCCATTCAGATTGAGGAAAGCTTTCCGCAAGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgt--aattttataacattgctctgtctttagtaaatgcctaaacaatagttgtactatctctcttacacactctgccattctttttcattttcttcacag-------------------------------------------------------------
                                        || ||||||||||||||||  || || ||||||||| | ||||||||||| ||||| |||||   ||||||   || ||     |  |  | || |   | | |  | ||| |  | ||  | ||   |  |     |||  ||| |  | ||     |                                                              
----------------------------------------GCATTCCGCAAGATTCATCTTCGACTTGTCAGAGAGTTGGAGAAGAAGTTTAGTGGGAAGgttgtattttactgcaatgtgacttgatatgaaattagttgatctttggttttcttttcaatgtttttccttaatatatttgtttaccatatcacattaatatggttattgtgagttcctggatcaacaatttgtattaactgaagattattgaatgacag

upper sequence: AT5G16130.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv17s0000g03530.t01 (Vitis vinifera), 5'ss of exon 5
CAAAGCTGTTGTGATTTACGTTCCATTCAGATTGAGGAAAGCTTTCCGCAAGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttataacattgctctgtctttagtaaatgcctaaacaatagttgtactatctctcttacacactctgccattctttttcattttcttcacag-------
 || |||||||| ||  |  | || | |||| |||| |||||||||||||||||||||    | || || |||||||||||||||||||||||||| |||||||| | |   || | || |   ||   | |||  | |   |||  |  | | |        | | |  |||  ||  ||  | ||   || |           
AAAGGCTGTTGTTATACATATCCCCTACAGACTGAGAAAAGCTTTCCGCAAGATTCATGTTAGGCTTGTGAGAGAGCTTGAGAAGAAGTTCAGTGGGAAGgtaatataac--cactactttcctttggtttaattgcaatttaattctgattccaaggtaaaca-agaagctggaat--ttggtaatgcgctgcgtgagactgaa

upper sequence: AT5G16130.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S49_260V6.1 (Physcomitrella patens), 5'ss of exon 1
CAAAGCTGTTGTGATTTACGTTCCATTCAGATTGAGGAAAGCTTTCCGCAAGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttataacattgc--tctgtctttagtaaatgcctaaacaatagttgtactatctctct-tacacactctgccattctttttcattttcttcacag
||| || || || ||| | || || | | |  |  | || || ||||  ||||| ||| |||| |||||| | ||||| ||||||||||||||||| ||||| | ||     || ||   | |   |||||        | | || |   ||     |   | | ||      ||| |  |  ||  |||  |  |||   
CAAGGCCGTCGTTATTCATGTGCCTTACCGCCTTCGCAAGGCCTTCCAGAAGATCCATGCCCGCCTCGTCCGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgtgagttggacccagtgtgattttgttttagatttctttttatcattgtgtgcgtagtgcgtttgtatttgtcctgtccataattg-catcgtgatcatga

upper sequence: AT5G16130.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S365_30V6.1 (Physcomitrella patens), 5'ss of exon 1
CAAAGCTGTTGTGATTTACGTTCCATTCAGATTGAGGAAAGCTTTCCGCAAGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttataacattgctctgtctttagtaaatgcctaaacaatagttgtactatctctcttacacactctgccattctttttcatt--ttcttcacag----
 || || ||| | ||| | || || ||| | ||| |||| |||||||  ||||| ||  | || |||||||| ||||| ||||||||||||||||| ||||| | | |           | || ||   |   |   |  |||    || ||  | ||||       | | |    || |||||   |  |  |  |||     
GAAGGCCGTTATCATTCATGTGCCTTTCCGCTTGCGGAAGGCTTTCCAAAAGATCCACGCTCGCCTCGTCAGGGAGCTGGAGAAGAAGTTCAGTGGCAAGgttaatgtccgcataaaaaccgttttctttgtgtaattccaca----ttttaaaacctcttcggtcgattgtcttgttgtttttgggtaatggtgtacaaagtt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125296901|gb|EL310986.1|EL310986
EST:     AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAG                         GATGTTATCTTTGTTACCACAAGAAGGATCATGCCGTCCCCCCAAGAAGGG
genomic: AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTGTTACCACAAGAAGGATCATGC-GTCCCCCCAAGAAGGG
EST: gi|125139851|gb|EL178406.1|EL178406
EST:     AGAGCTTGAGAAGAAGTTCAGTGGAAAG                         GATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGT
genomic: AGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGT
EST: gi|124976019|gb|EL049465.1|EL049465
EST:     GATTCATCCCCGTTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAG                         GATGTTATCTTTGTTACCACAAGAA
genomic: GATTCATCCCCG-TCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTGTTACCACAAGAA
EST: gi|164127810|gb|ES068282.1|ES068282
EST:     GAGAGCTTGAGAAGAAGTTCAGTGGAAAG                         GATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGT
genomic: GAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGT
EST: gi|164176264|gb|ES016246.1|ES016246
EST:     AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAG                         GATGTTATCTTTGTTACCA
genomic: AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTGTTACCA
EST: gi|86081513|gb|DR377270.1|DR377270
EST:     AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAG                         GATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGT
genomic: AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGT
EST: gi|86082268|gb|DR378027.1|DR378027
EST:     AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAATAAGTTCAGTGGAAAG                         GATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGT
genomic: AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGT
EST: gi|124719885|gb|EH811287.1|EH811287
EST:     AGAAGTTCAGTGGAAAG                         GATGTTATCTTTGTTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGG
genomic: AGAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTG-TTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGG
EST: gi|125252373|gb|EL266458.1|EL266458
EST:     AGCTTGAGAAGAAGTTCAGTGGAAAG                         GATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGT
genomic: AGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGT
EST: gi|124822601|gb|EH907467.1|EH907467
EST:     AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAG                         GATGTTATCTT
genomic: AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTT
EST: gi|124937738|gb|EL014449.1|EL014449
EST:     AGATTCATCCCCGTCTCGTCAGAGGGCTTGAGAAGAAGTTCAGTGGAAAG                         GATGTTATCTTTGTTACCACAAGAA
genomic: AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTGTTACCACAAGAA
EST: gi|124826216|gb|EH911082.1|EH911082
EST:     CTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAG                         GATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGT
genomic: CTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGT
EST: gi|124902651|gb|EH976731.1|EH976731
EST:     TCCCCGTTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAG                         GATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGT
genomic: TCCCCG-TCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGT
EST: gi|164144233|gb|ES090916.1|ES090916
EST:     GAAGTTCAGTGGAAAG                         GATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCTCCCAAGAAGGGT
genomic: GAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGT
EST: gi|164025275|gb|ES205961.1|ES205961
EST:     ATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGGTTACAGTGGAAAG                         GATGTTATCTTTGTTACCACAAGAAGG
genomic: ATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAG-TT-CAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTGTTACCACAAGAAGG
EST: gi|124834660|gb|EH919099.1|EH919099
EST:     AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAG                         GATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGG
genomic: AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGG
EST: gi|125116244|gb|EL165859.1|EL165859
EST:     CCGTCTCGTCAGAGAGCTTGAGAAGTAAGTTCAGTGGAAAG                         GATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCC-AAGAAGGGT
genomic: CCGTCTCGTCAGAGAGCTTGAGAAG-AAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGT
EST: gi|116415120|gb|EG457712.1|EG457712
EST:     AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAG                         GATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGT
genomic: AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGT
EST: gi|124981353|gb|EL054227.1|EL054227
EST:     AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAG                         GATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGT
genomic: AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGT
EST: gi|125103164|gb|EL157667.1|EL157667
EST:     AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAG                         GATGTTATCTTTGTTACCAC
genomic: AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTGTTACCAC
EST: gi|124942583|gb|EL018836.1|EL018836
EST:     AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAG                         GATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGT
genomic: AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGT
EST: gi|124909808|gb|EH983888.1|EH983888
EST:     AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAG                         GATGTTATCTTTG
genomic: AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTG
EST: gi|164165061|gb|ES032998.1|ES032998
EST:     CTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAG                         GATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCC
genomic: CTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCC
EST: gi|125065794|gb|EL132895.1|EL132895
EST:     AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAG                         GATGTTATCTTTGTTACCACAAG
genomic: AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTGTTACCACAAG
EST: gi|116385928|gb|EG428520.1|EG428520
EST:     AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAG                         GATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGT
genomic: AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTGTTACCACAAGAAGGATCATGCGTCCCCCCAAGAAGGGT
EST: gi|164032914|gb|ES192462.1|ES192462
EST:     AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAG                         GATGTTATCTTTGTT
genomic: AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTGTT
EST: gi|124855347|gb|EH939784.1|EH939784
EST:     AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAG                         GATGTTATCTTTG
genomic: AGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttat ... ttcttcacagGATGTTATCTTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAAGCTGTTGTGATTTACGTTCCATTCAGATTGAGGAAAGCTTTCCGCAAGATTCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGgtaattttataacattgctctgtctttagtaaatgcctaaacaatagttgtactatctctcttacacactctgccattctttttcattttcttcacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA