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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCACCGAAACAACTCCTCGAACATTTGCTTCAAAATTGCAGTCTAGAAGTCCAAAATACATATCTTTGCTCAACCATCTTAGAATATATATACCAGAGgtaaatctttatcccctagtttgaacttgcaatagaactcatggggattctaaatcatttgccaatttcgtctctttttttggaatag

Basic information

species Arabidopsis thaliana
transcript AT5G15470.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G15470.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G26480.1 (Glycine max), 5'ss of exon 4
CCTCACCGAAACAACTCCTCGAACATTTGCTTCAAAATTGCAGTCTAGAAGTCCAAAATACATATCTTTGCTCAACCATCTTAGAATATATATACCAGAGgtaaatctttatcccc------tagtttgaacttgcaatagaactc---atggggattctaaatcatttgccaatttcgtctctttttttggaatag---
 ||||  || || | ||| || | |||||| || ||||||||| | ||||||||||||||||||||||| |||||||||||  | |||||  |||||||||| |||     ||  |       | | ||   |     |  | |||   ||    ||| |   |  ||     |  || |   |   |||  | |     
TCTCAGTGACACCAGTCCACGTAAATTTGCATCTAAATTGCAGGCCAGAAGTCCAAAATACATATCTTTACTCAACCATCTCCGCATATACTTACCAGAGgtgaattgcattcaacaatgatcattctgttttctttgtccatctccacatatctattgttgcttgttcaagtagatcattgttaactttatattgcttt

upper sequence: AT5G15470.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA18G49960.1 (Glycine max), 5'ss of exon 4
CCTCACCGAAACAACTCCTCGAACATTTGCTTCAAAATTGCAGTCTAGAAGTCCAAAATACATATCTTTGCTCAACCATCTTAGAATATATATACCAGAGgtaaatctttatcccctagtttgaacttgcaatagaactcatggggat-tctaaatcatttgccaatttcgtctctttttttgga-atag-------------
 ||||  || |  | ||| || | |||||| || ||||||||| | ||||||||||| ||||||||||| |||||||||||  | |||||  |||||||||||||| |  || |   | |  || | | |  |     |  |     | |||   ||  |  |    |   ||||| | | |  | |||              
TCTCAGTGACATCAGTCCACGTAAATTTGCATCTAAATTGCAGGCCAGAAGTCCAAAGTACATATCTTTACTCAACCATCTCCGCATATACTTACCAGAGgtaaat-tgcattcaacaat--gatcattctgttttctttgtccatctctctctctctctctctctctctctctctatatatatatatatatatatatatata

upper sequence: AT5G15470.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA19G03460.1 (Glycine max), 5'ss of exon 4
CCTCACCGAAACAACTCCTCGAACATTTGCTTCAAAATTGCAGTCTAGAAGTCCAAAATACATATCTTTGCTCAACCATCTTAGAATATATATACCAGAGgtaaatctttatcccctagtttgaacttgcaatagaactcatggggattctaaatcatttgccaatttcgtctctttttttggaatag------------
 ||||  || || | |||    | |||||| |||||||||||| ||||||||||||| || |||||||| |||||||||||  | || || ||||| ||||||| |     ||  | | | |   ||| |  |     |  |  |      | |  ||||| |  |    |||   |||   |   |             
TCTCAGTGATACCAATCCATATAAATTTGCCTCAAAATTGCAGGCTAGAAGTCCAAAGTATATATCTTTACTCAACCATCTCCGCATTTACATACCCGAGgtaagttggattcaacaattatactctttctgtcttctttctatgttggtcagaatatttgtctgtaagttctgcatttcaagctcataaaagcttctta

upper sequence: AT5G15470.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G05950.1 (Glycine max), 5'ss of exon 4
CCTCACCGAAACAACTCCTCGAACATTTGCTTCAAAATTGCAGTCTAGAAGTCCAAAATACATATCTTTGCTCAACCATCTTAGAATATATATACCAGAGgtaaatctttatcccctagtttgaacttgcaatagaactcatggggattctaaatcatttgccaattt-cgtctctttttttgga-atag----------
 ||||  || || | |||    | |||||| |||||||||||| | ||||||||||| || ||||||||||||||||||||  | || || ||||| ||||||| |     ||  | | | |   ||| |  |    |   |     |         | | |  || |   | | | | | |  | |||           
TCTCAGTGATACCAATCCATATAAATTTGCCTCAAAATTGCAGGCAAGAAGTCCAAAGTATATATCTTTGCTCAACCATCTCCGCATTTACATACCTGAGgtaagttggattcaacaattatactctttctgtctttcctctctctctctctctctctctacatatatatatatatatatatatatatatatatatatat

upper sequence: AT5G15470.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv14s0108g01520.t01 (Vitis vinifera), 5'ss of exon 4
CCTCACCGAAACAACTCCTCGAACATTTGCTTCAAAATTGCAGTCTAGAAGTCCAAAATACATATCTTTGCTCAACCATCTTAGAATATATATACCAGAGgtaaatctttatcccctagtttga------acttgcaatagaactcatggggattctaaatcattt--gccaatttcgtctctttttttggaatag-----
 ||||  || || ||||| |||| ||||||||| ||||||||| |||||||||| || ||||| || ||||||||||||||  | |||||||||||||||||||     | |    |  | |        ||||    |  |  || ||   | | ||||   |||  |  ||| |   |    | ||||| ||       
TCTCAGTGAGACTACTCCACGAAGATTTGCTTCGAAATTGCAGGCTAGAAGTCCTAAGTACATTTCCTTGCTCAACCATCTCCGCATATATATACCAGAGgtaatctgatgtggtttgatatatttctccacttattgtgtagatc-tgaaaactataaaagcttttggttaatatatacaaaatatttggtattagaggt