1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGGAGGTTACGTTGCCGGAGTGTTCTGTGCCATCGTTTCTCATCCAGCAGACAATCTAGTGTCATTCCTCAACAACGCTAAGGGAGCAACCGTTGGAGATgtaagtcactatgtttgaatacaatagcctaatgctagaatggctgtggtttggtagttgtatacaagctattgatttctgttacggtagaaataatatttaatgtttgtaaatgacatgttgcag
species | Arabidopsis thaliana |
transcript | AT5G14040.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACAATCTAGTGTCATTCCTCAACAACGCTAAGGGAGCAACCGTTGGAGAT GCGGTGAAGAAGATTGGTATGGTGGGACTGTTCACAAGAGGGCTTCCTCTTEST: gi|125033394|gb|EL105663.1|EL105663
genomic: ACAATCTAGTGTCATTCCTCAACAACGCTAAGGGAGCAACCGTTGGAGATgtaagtcact ... catgttgcagGCGGTGAAGAAGATTGGTATGGTGGGACTGTTCACAAGAGGGCTTCCTCTT
EST: TAAGGGAGCAACCGTTGGAGAT GCGGTGAAGAAGATTGGTATGGTGGGACTGTTCACAAGAGGGCTTCCTCTTEST: gi|125079075|gb|EL141218.1|EL141218
genomic: TAAGGGAGCAACCGTTGGAGATgtaagtcact ... catgttgcagGCGGTGAAGAAGATTGGTATGGTGGGACTGTTCACAAGAGGGCTTCCTCTT
EST: AACGTCTAAGGGAGCAACCGTTGGAGAT GCGGTGAAGAAGATTGGTATGGTGGGACTGTTCACAAGAGGGCTTCCTCTTEST: gi|124807308|gb|EH893712.1|EH893712
genomic: AACG-CTAAGGGAGCAACCGTTGGAGATgtaagtcact ... catgttgcagGCGGTGAAGAAGATTGGTATGGTGGGACTGTTCACAAGAGGGCTTCCTCTT
EST: ACAATCTAGTGTCATTCCTCAACAACGCTAAGGGAGCAACCGTTGGAGAT GCGGTGAAGAA
genomic: ACAATCTAGTGTCATTCCTCAACAACGCTAAGGGAGCAACCGTTGGAGATgtaagtcact ... catgttgcagGCGGTGAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGAGGTTACGTTGCCGGAGTGTTCTGTGCCATCGTTTCTCATCCAGCAGACAATCTAGTGTCATTCCTCAACAACGCTAAGGGAGCAACCGTTGGAGATgtaagtcactatgtttgaatacaatagcctaatgctagaatggctgtggtttggtagttgtatacaagctattgatttctgttacggtagaaataatatttaatgtttgtaaatgacatgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT