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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGCGGCAATTTCTCCCTGAGGGAGTTGATGTGGAGCAAGTTGTACAAGCATTGCTTGATGGCGAGAATTTTCATTTTGGAAATCCTTCTCTTGATTGgttagttacactggactttttggtttggattcctagaatgcactctgtgattgcttgcctataccaaaatagagcttgatttaatgccaacatccgtgatctgccttcgcatcctcattataaaccgtatacttagtgatggtctaatttatgctcagaaattcgactccgttttgaatctaaattgtggtttcag

Basic information

species Arabidopsis thaliana
transcript AT5G13950.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G13950.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv14s0068g01010.t01 (Vitis vinifera), 5'ss of exon 3
ATCTGCGGCAATTTCTCCCTGAGGGAGTTGATGTGGAGCAAGTTGTACAAGCATTGCTTGATGGCGAGAATTTTCATTTTGGAAATCCTTCTCTTGATTGgttagttacactggactttttggtttggattcctagaatgcac--tctgtgattgcttgcctataccaaaatagagcttgatttaatgccaacatccgtgatctgccttcgcatcctcattataaaccgtatacttagtgatggtctaatttatgctcagaaattcgactccgttttgaatctaaattgtggtttcag
 |||    || ||||| ||    ||| | |||| | |||||||||| |||||||||||||  || || || ||||| ||||||||||||| |||  | |||  |||     | ||| ||   ||||  ||| ||||| |  |     | |  |||||    | | |  ||| | || |   ||   |       |     |  |                                                                                              
TTCTTACACAGTTTCTTCCCAGTGGACTGGATGGGCAGCAAGTTGTGCAAGCATTGCTTGCAGGGGATAACTTTCACTTTGGAAATCCTTTTCTCAAATGgcaagtatttttagacatt---gtttctatttctagactaaatggcttatttttgct-atttttcctgaaacacag-taatttctgtatttctctttactaaata---------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877160|gb|AU237991.1|AU237991
EST:     GCATTGCTTGATGGCGAGAATTTTCATTTTGGAAATCCTTCTCTTGATTG                         GGGAACAGCTGTCTGCTCCGGTAAAGCTCATNCAGATCAAATCGTTTCACG
genomic: GCATTGCTTGATGGCGAGAATTTTCATTTTGGAAATCCTTCTCTTGATTGgttagttaca ... gtggtttcagGGGAACAGCTGTCTGCTCCGGTAAAGCTCATCCAGATCAAATCGTTTCACG