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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGGACACGATCCACATATCCTATATACACTCAGTGCTGTACAAATCTTGGCCCTATTTGACAAAATCAACATTCTTGACATTGGGAAAGTGTCAAGTTgtatccttttgcacttagctttttgtcaatgtcactaactcgttcttcttcacaaatagtcatggtggaactttcatatgttaattaatcaatgatgttaaacaagaaggaaaaaccctgccttatagtagatattattatgttttcctatatacaatattag

Basic information

species Arabidopsis thaliana
transcript AT5G12210.2
intron # 4
splice site 5'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19874896|gb|AU235727.1|AU235727
EST:     GGCCCTATTTGACAAAATCAACATTCTTGACATTGGGAAAGTGTCAAGTT                         ATGTTGCTAAGTTGCAGAATGAAGATGGATCCTTCTNAGGAGATATGTGGG
genomic: GGCCCTATTTGACAAAATCAACATTCTTGACATTGGGAAAGTGTCAAGTTgtatcctttt ... acaatattagATGTTGCTAAGTTGCAGAATGAAGATGGATCCTTCTCAGGAGATATGTGGG
EST: gi|124859584|gb|EH944021.1|EH944021
EST:     GGCCCTATTTGACAAAATCAACATTCTTGACATTGGGAAAGTGTCAAGTT                         ATGTTGCTAAGTTG
genomic: GGCCCTATTTGACAAAATCAACATTCTTGACATTGGGAAAGTGTCAAGTTgtatcctttt ... acaatattagATGTTGCTAAGTTG
EST: gi|125103648|gb|EL157982.1|EL157982
EST:     AATCAACATTCTTGACATTGGGAAAGTGTCAAGTT                         ATGTTGCTAAGTTGCAGAATGAAGATGGATCCTTCTCAGGAGATATGTGGG
genomic: AATCAACATTCTTGACATTGGGAAAGTGTCAAGTTgtatcctttt ... acaatattagATGTTGCTAAGTTGCAGAATGAAGATGGATCCTTCTCAGGAGATATGTGGG