1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCCATGGTGGAGCCAGAGCAGCTGAGTACGTGAAGCGCCATCTTTTCAGTAATCTGATCACCCACCCAAAGTTTATCTCTGACACCAAATCAGCTATAAgtactgtaaaaaaatcatgagcaaagcttttttaaaacaatttgttgtagatgcagcaggactctaatttacattccattttcttcaatgttttccag
species | Arabidopsis thaliana |
transcript | AT5G10740.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TAATCTGATCACCCACCCAAAGTTTATCTCTGACACCAAATCAGCTATAA CTGATGCTTATAACCATACAGACTCCGAACTTCTCAAGTCAGAAAATAGTCEST: gi|19877556|gb|AU238387.1|AU238387
genomic: TAATCTGATCACCCACCCAAAGTTTATCTCTGACACCAAATCAGCTATAAgtactgtaaa ... tgttttccagCTGATGCTTATAACCATACAGACTCCGAACTTCTCAAGTCAGAAAATAGTC
EST: TAATCTGATCACCCACCCAAAGTTTATCTCTGACACCAAATCAGCTATAA CTGATGCTTATAACCATACAGACTCCGAACTTCTCAAGTCAGAAAATAGTCEST: gi|125187608|gb|EL202562.1|EL202562
genomic: TAATCTGATCACCCACCCAAAGTTTATCTCTGACACCAAATCAGCTATAAgtactgtaaa ... tgttttccagCTGATGCTTATAACCATACAGACTCCGAACTTCTCAAGTCAGAAAATAGTC
EST: TCTGACACCAAATCAGCTATAA CTGATGCTTATAACCATACAGACTCCGAACTTCTCAAGTCAGAAAATAGTCEST: gi|125241646|gb|EL255731.1|EL255731
genomic: TCTGACACCAAATCAGCTATAAgtactgtaaa ... tgttttccagCTGATGCTTATAACCATACAGACTCCGAACTTCTCAAGTCAGAAAATAGTC
EST: ACACCAAATCAGCTATAA CTGATGCTTATAACCATACAGACTCCGAACTTCTCAAGTCAGAAAATAGTCEST: gi|116449507|gb|EG492099.1|EG492099
genomic: ACACCAAATCAGCTATAAgtactgtaaa ... tgttttccagCTGATGCTTATAACCATACAGACTCCGAACTTCTCAAGTCAGAAAATAGTC
EST: TAATCTGATCACCCACCCAAAGTTTATCTCTGACACCAAATCAGCTATAA CTGATGCTTATAACCATACAGACTCCGAACTTCTCAAGTCAGAAAATAGTC
genomic: TAATCTGATCACCCACCCAAAGTTTATCTCTGACACCAAATCAGCTATAAgtactgtaaa ... tgttttccagCTGATGCTTATAACCATACAGACTCCGAACTTCTCAAGTCAGAAAATAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCATGGTGGAGCCAGAGCAGCTGAGTACGTGAAGCGCCATCTTTTCAGTAATCTGATCACCCACCCAAAGTTTATCTCTGACACCAAATCAGCTATAAgtactgtaaaaaaatcatgagcaaagcttttttaaaacaatttgttgtagatgcagcaggactctaatttacattccattttcttcaatgttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT