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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagattccaccccattgataaaattatacagcttctctttttttcattaatcttctgtgttttttatttatgtgatctggttattgtgtttag

Basic information

species Arabidopsis thaliana
transcript AT5G10360.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 5'ss of exon 4
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagattccaccccattgataaaattatacagcttctctttttttcattaatcttctgtgttttttatttatgtgatctggttattgtgtttag--
|| || |||||||||||||||||||| |||||||||||||||||||| ||||| || || || || ||| | || |||||||| ||| | || ||| | ||||   | ||       ||   || | ||  |  | |    ||  |||   |   ||     || || || |       |    || || |  | |   
GGCTATGTATTCAAGATCATGGGAGGCTGTGACAAGCAAGGTTTCCCCATGAAGCAGGGTGTGCTTACTTCTGGACGTGTCCGCCTTCTCCTCCACAGGGgtagatgtttaag----atgcttacatttgaatggttatgtttcattttgctttgctggcaggtgttctaatgtgaatgttccatttttatactgacag

upper sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 5'ss of exon 4
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtacta-gattccaccccattgataaaattatacagcttctctttttttcattaatcttctgtgttttttatttatgtgatctggttattgtgtttag
|| || || |||||||||||||| || ||||||||||| |||||||| ||||| || ||||| |||||| | || |||||||| ||| | |||||| | ||||  | |  || |   |  | ||  | ||    |  |||      || |  | | | | |   | | ||| || | ||                   
GGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGgtaaaaaggctctatttctattattgactttcggatattcatgcccttgctctgaccatat---tatgttacttgtatggcag---------------

upper sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM5G851698_T01 (Zea mays), 5'ss of exon 4
---------GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtac-tagattccaccccattgataaaattatacagcttctctttttttcattaatcttctgtgttttttatttatgtgatctggttattgtgtttag
         || || || |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| ||| | || |||||||| ||| |||| ||| ||||||  |||| |  | | |  |  ||                                                                         
GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATgtgacaaacaaggcttcccaatgaagcaaggagttctgacttctggtcgtgtccgccttctgctccacagaggtatatagactgtatctccattgtactc----------------------------------------------------------------------

upper sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 4
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtac-tagattccaccccattgataaaattatacagcttctctttttttcattaatcttctgtgttttttatttatgtgatctggttattgtgtttag
|| || || |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| ||| | || |||||||| ||| |||| ||| ||||||  |||| |  | | |  |  ||   | | ||| |  |||||||     |   |||| | ||    ||  | || |||  ||  ||          
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagactgtatctccattgtactctca-acaccccctcttttacctgtggttcttatctgaacatt--tgatatgaattgtgtag---------

upper sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G054136_T06 (Zea mays), 5'ss of exon 3
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagattccaccccattgataaaat-tatacagcttctctttttttcattaatcttctgtg----ttttttatttatgtgatctggttattgtgtttag
|| || || |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| | ||| | || ||||| |||||| |||| ||  | |||| ||||  |   || ||| | |   |     ||||  |   ||||    | | |||| | ||    ||   |||  ||    |  ||      || ||  
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgta-tagagact-tcctatttacagtgtactctcagcaccatcttttactctgattcttatctgaacattcgatatcaattctgtagggactccctgcttcc

upper sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G054136_T02 (Zea mays), 5'ss of exon 3
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagattccaccccattgataaaattata-cagcttctctttttttcattaatcttctgtgttttttatttatgtgatctggttattgtgtttag
|| || || |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| | ||| | || ||||| |||||| |||| ||  | |||| ||||  |   || ||| | |   |  |  ||||  |   ||||    | | |||| | ||    ||   |||   ||   ||            
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgta-tagagact-tcctatttacagtgtactctcagcaccatcttttactctgattcttatctgaacattcgatat-caattctgtag----------

upper sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G054136_T01 (Zea mays), 5'ss of exon 4
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagattccaccccattgataaaattat--acagcttctctttttttcattaatcttctgtgttttttatttatgtgatctggttattgtgtttag
|| || || |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| | ||| | || ||||| |||||| |||| ||  | ||||          |    |  |    | | |  ||| | ||| ||  | | |||  |  ||||    ||  || |   |  | | |             
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGCTCCATAGGGgtatagagacttcctatgtccagtgtactctcaacaccatcttttactctgattc-ttatctgaacattcgatatcaattctgtag-------------

upper sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA18G26190.1 (Glycine max), 5'ss of exon 3
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagatt-ccaccccattgataaaattatacagcttctctttttttcattaatcttctgtgttttttatttatgtgatctggtt--attgtgtttag--
|| || || ||||| || |  ||||| |||||||| ||||| ||||| |||||||| ||||| || ||||| || ||||| || |||||||||||| | ||||  |  |  |        |  |    || | || | | | | ||   | ||| |  | ||   ||||||| | | | ||||  ||  ||    |  |   
GGCTATGTCTTCAAAATTACTGGAGGTTGTGACAAACAAGGATTCCCGATGAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGGgtatgatgtagctttgatgcttttttttttgttcaacctatatgttcggc-ttagttctgtgccctttttatattt-taatctttttaaatcaaatccattt

upper sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 5'ss of exon 4
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgt------actagattccaccccattgataaaattatacagcttctctttttttcattaatcttctgtgttttttatttatgtgatctggt---tattgtgtttag--------
|| || || |||||||||||||| || |||||||||||||| || || ||||| || ||||| || ||||| || |||||  |||||||||||||  | |||      ||| |       |  ||   |||||    |   |  | |||   ||||| | | || ||    ||   | |||| ||| |  |     || || |||         
GGCTATGTTTTCAAGATCATGGGTGGTTGTGACAAGCAAGGGTTTCCCATGAAGCAGGGAGTACTGACTCCTGGCCGTGTTAGTCTTTTGCTTCATAGGGgtgagtaaactgggactgttctaatccttaaaaactgatcacaacccttaagttcat-atttttatgcaagttgggtctatgagatttattacactttatgcttatttgagcag

upper sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 4
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgt-actagatt---ccaccccattgataaaatt--------atacagct---tctctttttttcattaatcttctgtgttt-tttatttatgtgatctggtta---ttgtgtttag-------------------------------------------------------------------
|| || |||||||| || |||||||| ||||||||||||||||| |||||||| || ||||| || || ||||| || ||||  ||| |||||||| |||||   |||| |   | ||  | |||   | |||        | |||  |   |    |||||  ||     ||  | |||| |||    || |  ||  ||||   ||||| |||                                                                    
GGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatattgttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattttgcttgaacag

upper sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagattc-caccccattgataaaattatacagcttctctttttttca---ttaatct---tctgtgttttttatttatgtgatctggtt--attgtgtttag---------------------------------------------------
|| || |||||||| ||||||||||| |||||||||||||| ||||||||||| || |||||  | ||||| || |||||  |||| ||||| ||  |||||      ||        |||  |     |  || |     | ||  ||||   ||||  |   ||   |    |||      || | || |   |   ||||| |                                                   
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag

upper sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S253_38V6.1 (Physcomitrella patens), 5'ss of exon 3
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtacta-gat---tccaccccattgataaaattatacagcttctctttttttcattaatcttctgtgttttt-----tatttatgtgatctggttattgtgtttag---------------------------------------------------------------------------------
|| || || ||||||||||||||||| || |||||||| |||||||||||||| || ||||||||||||| ||| ||||| |  ||  || | ||| ||||||    |||   |  || |   || |    | ||  || |   ||  | |  |  |  | | | |||  |      |  |  ||||         ||| ||   |                                                                                 
GGGTATGTCTTCAAGATCATGGGAGGCTGCGACAAGCAGGGTTTCCCAATGAAGCAGGGAGTTCTCACTCAAGGCCGTGTGCAGCTCCTGATGCACAGAGgtatggcgatagatagacacgggtgttggtgtcatgaag-taggctagtctgaacgagacatttatgtcctcgctgctcctcttgtgcaacaagcgttgagtggggttgtggagtggtttgatgggctcagtatgggtgcgagaatttagttctcccttttgtaacgattattgtgtgttgttgcag

upper sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S253_7V6.1 (Physcomitrella patens), 5'ss of exon 3
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagattccaccccattgataaaattatacagcttctctttttt-tcattaatcttctgtgt------tttttatttatgt---gatctggttattgtgtttag------------------------------------------------------
|| || || |||||||| |||||||| || |||||||| |||||||| ||||| || ||||||||||| | ||| ||||| |  || ||| | ||| ||||||      |  || |   || ||    |    || |  | | |    ||| |      |||||          | | ||  ||     |    ||  ||   | ||                                                      
GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggatataaacacagctggtatgtctgagtagatcatttatcgcgtcactgcctcgctgtgcagaaagcgatgagttgcgttgaagtacctttgatgcactcagtacggccgcgaggttatgattttcatctgtaacgactcttgcctgttgtcgcag

upper sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S311_33V6.1 (Physcomitrella patens), 5'ss of exon 3
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagattccaccccattgataaaattatacagcttctctttttttcattaatcttctgtgttttttattta-tgtgatctggttattgtgtttag--------------------------------------------------------------------
|||||||| |||||||| |||||||||||||||||||| |||||||| ||||| || || ||  | || |  || ||||| |  ||  || | ||||||||||| |  ||   | ||          |  |     | ||  |  |   | ||||  ||  ||  | | |   |  || |    |      |  |||                                                                     
GGATACGTTTTCAAGATTATGGGAGGATGTGACAAGCAGGGTTTCCCCATGAAGCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAGgtacaacgttaaccacctgccgcttcctcttgtca-tgctagtgctgggaataattgtcgatggatgtaacagaacgtcactatgcacacctacttacaaggcgcgtcttgattttcggttgcaactataatgcagtaaagtaatgaaatttttgttcttctgaag

upper sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S311_33V6.2 (Physcomitrella patens), 5'ss of exon 3
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagattccaccccattgataaaattatacagcttctctttttttcattaatcttctgtgttttttatttatgtgatctggttattgtgtttag
                                                                ||  || |     || |   | | |   |||    |  | | |   ||| |    |||| |  | | |  | | |     ||||||   ||  |  | |  | | |       | | |    ||   |     
----------------------------------------------------------------TCG-TCAATTTTATGACAAGCGTCTTGCTCAAGAGgtcagtggtgaccagcttggtgatgagttca-agggatacg----ttttcaa-gattatgggaggatgtgacaagcagggtttccccatgaag-----

upper sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 3
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagattccaccccattgataaaattatacagcttctctttttttcattaatcttctgtgttttttatttatgtgatctggttattgtgtttag
|| || || ||||||||||||||||||||||||||| | || ||||| ||||| || || || ||||   |   |||||| || ||  || |  |||||||||  | |     |  | ||  |     | | |  | ||| |  || | |||     |  |||                                  
GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgta--aaacgatgcttctttttt----cttttctccctctttcgttctgatttgagattcgtgaccag-----------------------------

upper sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EFJ26393 (Selaginella moellendorffii), 5'ss of exon 3
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagattccaccccattgataaaattatacagcttctctttttttcattaatcttctgtgttttttatttatgtgatctggttattgtgtttag
|| || || ||||||||||||||||||||||||||| | || ||||| ||||| || || |||||||   |   |||||| || ||  || |  |||||||||  | |     |  | ||  |     | | |  | ||| |  || | |||     |  |||                                  
GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgta--aaacgatgcttctttttt----cttttctccctctttcgttctgatttgagattcgtgaccag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116469836|gb|EG512428.1|EG512428
EST:     GAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAG                         GTACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAA
genomic: GAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagatt ... ttgtgtttagGTACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAA
EST: gi|125037387|gb|EL109656.1|EL109656
EST:     CGTGTCCGTCTTTTGCTTCACCGAG                         GTACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAA
genomic: CGTGTCCGTCTTTTGCTTCACCGAGgtactagatt ... ttgtgtttagGTACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAA
EST: gi|124850736|gb|EH935173.1|EH935173
EST:     GAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAG                         GTACTCCTTGTT
genomic: GAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagatt ... ttgtgtttagGTACTCCTTGTT
EST: gi|164114430|gb|ES068524.1|ES068524
EST:     GAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAG                         GTACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAA
genomic: GAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagatt ... ttgtgtttagGTACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAA
EST: gi|116469839|gb|EG512431.1|EG512431
EST:     GAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAG                         GTACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAA
genomic: GAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagatt ... ttgtgtttagGTACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAA
EST: gi|124805097|gb|EH892554.1|EH892554
EST:     CGTCTTTTGCTTCACCGAG                         GTACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAA
genomic: CGTCTTTTGCTTCACCGAGgtactagatt ... ttgtgtttagGTACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAA
EST: gi|124842392|gb|EH926829.1|EH926829
EST:     CGTGTCCGTCTTTTGCTTCACCGAG                         GTACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAA
genomic: CGTGTCCGTCTTTTGCTTCACCGAGgtactagatt ... ttgtgtttagGTACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAA
EST: gi|125315624|gb|EL329709.1|EL329709
EST:     GAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAG                         GTACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAA
genomic: GAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagatt ... ttgtgtttagGTACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAA
EST: gi|164067972|gb|ES038829.1|ES038829
EST:     GAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAG                         GTACTCCTTGTTTTAGAGGACACGGAAGGAGGA
genomic: GAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagatt ... ttgtgtttagGTACTCCTTGTTTTAGAGGACACGGAAGGAGGA
EST: gi|125206555|gb|EL221509.1|EL221509
EST:     GAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAG                         GTACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGA
genomic: GAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagatt ... ttgtgtttagGTACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGA
EST: gi|164222456|gb|ES108445.1|ES108445
EST:     GGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAG                         GTACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAA
genomic: GGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagatt ... ttgtgtttagGTACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtactagattccaccccattgataaaattatacagcttctctttttttcattaatcttctgtgttttttatttatgtgatctggttattgtgtttag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG