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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGTAGACTTCGTGATGCACTGGCTCAAGACTCTGGTTTGGAGTCTGAATACATACTTGTAGGCTGTGGTGCTGACGAACTTATTGATTTGATCATGAGgtatggcttcaagatttgatttttcagtcaattgagcttctaccagaatcgtattttctgactaaaactctgtttcttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G10330.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10330.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G27220.1 (Glycine max), 5'ss of exon 4
GTCGTAGACTTCGTGATGCACTGGCTCAAGACTCTGGTTTGGAGTCTGAATACATACTTGTAGGCTGTGGTGCTGACGAACTTATTGATTTGATCATGAGgtatggcttcaagatttgatttttcagtcaattgagcttctaccagaatcgtatt-ttctgactaaaactctgtttcttgcag----------------------------------
| || ||| | || |  || || || || || || ||  | ||  ||||||| || |||| ||| |||||||| || || |||||||||||||||||| ||| | |   ||| |  | || | |   | |  | ||| || |      ||   |  | || | |   |   |   |    ||                                   
GCCGCAGATTGCGCGCAGCTCTTGCCCATGATTCAGGCCTTGAAGCTGAATATATTCTTGCAGGGTGTGGTGCAGATGAGCTTATTGATTTGATCATGCGgt-tagaaccaataccttatgtatt--ttagataagcctcaaattctttctcttcatgctaattgtcatcatagctacgacaatcaccatcatacatgcttctcatatatactccag