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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGAACACATCCAAGTGGATTGAGGATGTTCGTACAGAGAGAGGTAGCGATGTCATCATTGTTCTGGTTGGTAACAAAACAGATCTCGTCGACAAAAGgtaagaaacacttgacgagaatgagacatggaagctttttctatttagctatccaacttgatatttccatttgacag

Basic information

species Arabidopsis thaliana
transcript AT5G10260.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10260.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA18G02040.1 (Glycine max), 5'ss of exon 4
TCTTGAACACATCCAAGTGGATTGAGGATGTTCGTACAGAGAGAGGTAGCGATGTCATCATTGTTCTGGTTGGTAACAAAACAGATCTCGTCGACAAAAGgtaagaaacacttgacgagaatgagacatggaagctttttctattta--gctatccaacttgatatttcca--tttgacag-------------------
| ||||||||   ||||||||||||||| || ||||||||  |||| || ||||| || |||||  ||||||| || ||||| ||||| || || ||||||| || ||    |    | |   || ||  |||  | ||| | || |  | |||   | | |  | |  ||  ||||  |                    
TTTTGAACACTAACAAGTGGATTGAGGAGGTGCGTACAGAACGAGGCAGTGATGTTATTATTGTATTGGTTGGGAATAAAACTGATCTTGTTGAAAAAAGgtgagcaatgagtttgtatatccagtcaatgaaaatctttttcttaaaggttatattattagcaaataacaagtttgctaagaatcttcatcaagaattt

upper sequence: AT5G10260.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G38110.1 (Glycine max), 5'ss of exon 4
TCTTGAACACATCCAAGTGGATTGAGGATGTTCGTACAGAGAGAGGTAGCGATGTCATCATTGTTCTGGTTGGTAACAAAACAGATCTCGTCGACAAAAGgtaagaaac-acttgacgagaatgagacatggaag-ctttttctatttagctatccaact--tgatatttcca-tttgacag------------------
| ||||||||   ||||||||||||||| || ||||||||  |||| || ||||| || |||||  ||||||| || ||||| ||||| || || ||||||| || ||  | ||    |   ||    ||| ||  | ||| ||     | |||   | |  | | ||  | | ||||  |                   
TTTTGAACACTAACAAGTGGATTGAGGAGGTGCGTACAGAACGAGGCAGTGATGTTATTATTGTATTGGTTGGGAATAAAACTGATCTTGTTGAAAAAAGgtgagcaatgagtttgtaaatctggtcaatgaaaatcctttacttaaaggttatattattagtaaaataacaagtttgctaactggatatcttcatcaag

upper sequence: AT5G10260.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G14390.1 (Glycine max), 5'ss of exon 4
TCTTGAACACATCCAAGTGGATTGAGGATGTTCGTACAGAGAGAGGTAGCGATGTCATCATTGTTCTGGTTGGTAACAAAACAGATCTCGTCGACAAAAGgtaagaaaca-cttgacgagaatgagacatggaagctttttctatttagctatccaacttgatatttccatttgacag------------------------
|  |||||||   ||||||| ||||||| |||||||||||  | || || ||||| || |||||  ||||||| |||||||| ||||| || || ||||||| || |  |  |||      ||||  | |  |    |     | |||  |    ||||   | ||   |   |  ||                        
TTCTGAACACTAACAAGTGGGTTGAGGAGGTTCGTACAGAACGTGGCAGTGATGTTATTATTGTGTTGGTTGGAAACAAAACTGATCTTGTTGAAAAAAGgtgagtactaatttggtctatatgattctttaatttataaaaaaattaaattcttaact--gttttgttaagcggaagttttagtgttttgaaccttctatt

upper sequence: AT5G10260.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv00s0665g00040.t01 (Vitis vinifera), 5'ss of exon 4
TCTTGAACACATCCAAGTGGATTGAGGATGTTCGTACAGAGAGAGGTAGCGATGTCATCATTGTTCTGGTTGGTAACAAAACAGATCTCGTCGACAAAAGgtaagaa--acacttgacga-gaatgagaca--tggaagctttttctattt-agcta--tccaact--tgatatttccatttgacag-------------
|  ||||||| ||||||||||||||||| || ||||||||  |||| |  |||||||| |||||||| ||||| || ||||| ||||| || || ||||||| | |   | |||       |  |  ||||  |  |||  |  |  || | || ||  |   ||   ||   || |  | |  ||              
TTCTGAACACGTCCAAGTGGATTGAGGAAGTGCGTACAGAACGAGGCACTGATGTCATTATTGTTCTTGTTGGGAATAAAACCGATCTTGTTGATAAAAGgttatatttatactcattactgtgttggacaattccaagtctggtgaatctcagttacttttgacccatggctttcctttctctcaattttaactgccaa