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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATACTAAGCAGACATCAACTCACTGAGTTTGAGgtacaatgttaaatctcttgagattggatttttgtttatcaattaagtcgtttcggtagaagacttaaaacattgcattgttcattattgaacag

Basic information

species Arabidopsis thaliana
transcript AT5G09920.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125017493|gb|EL089762.1|EL089762
EST:     AATACTAAGCAGACATCAACTCACTGAGTTTGAG                         CTATGTGTTCTTGGCAATCT
genomic: AATACTAAGCAGACATCAACTCACTGAGTTTGAGgtacaatgtt ... tattgaacagCTATGTGTTCTTGGCAATCT
EST: gi|86077577|gb|DR373334.1|DR373334
EST:     AATACTAAGCAGACATCAACTCACTGAGTTTGAG                         CTATGTGTTCTTGGCAATCTCTGTCCCGAAACTGTTGAAGAAGCAGTGGCA
genomic: AATACTAAGCAGACATCAACTCACTGAGTTTGAGgtacaatgtt ... tattgaacagCTATGTGTTCTTGGCAATCTCTGTCCTGAAACTGTTGAAGAAGCAGTGGCA
EST: gi|164181711|gb|ES049029.1|ES049029
EST:     AATACTAAGCAGACATCAACTCACTGAGTTTGAG                         CTATGTGTTCTTGGCAATCTCTGTCCTGAAACTGTTGAAGAAGCAG
genomic: AATACTAAGCAGACATCAACTCACTGAGTTTGAGgtacaatgtt ... tattgaacagCTATGTGTTCTTGGCAATCTCTGTCCTGAAACTGTTGAAGAAGCAG
EST: gi|163979944|gb|ES046053.1|ES046053
EST:     AATACTAAGCAGACATCAACTCACTGAGTTTGAG                         CTATGTGTTCTTGGCAATCTCTGTCCT
genomic: AATACTAAGCAGACATCAACTCACTGAGTTTGAGgtacaatgtt ... tattgaacagCTATGTGTTCTTGGCAATCTCTGTCCT
EST: gi|124836965|gb|EH921404.1|EH921404
EST:     ATCAACTCACTGAGTTTGAG                         CTATGTGTTCTTGGCAATCTCTGTCCTGAAACTGTTGAAGAAGCAGTGGCA
genomic: ATCAACTCACTGAGTTTGAGgtacaatgtt ... tattgaacagCTATGTGTTCTTGGCAATCTCTGTCCTGAAACTGTTGAAGAAGCAGTGGCA