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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGTCGTCTAAGAACTCATCAAGTGATAAGGAATTCCTCAAAGGCTCCATCCTCCTAATCTTTGCAACACTCGCTTGGGCCTCCCTCTTTGTTCTACAGgtgtgtacacacataaagagacaaaattgagtgacaactcgagatcctctttttctttattcatatataatatatttctttttgtgtttacgtacagttttacaagtattcgcttattattgttcttttggtttggttgatgtgattag

Basic information

species Arabidopsis thaliana
transcript AT5G07050.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G07050.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA04G15590.1 (Glycine max), 5'ss of exon 4
GACGTCGTCTAAGAACTCATCAAGTGATAAGGAATTCCTCAAAGGCTCCATCCTCCTAATCTTTGCAACACTCGCTTGGGCCTCCCTCTTTGTTCTACAGgtgtgtacacacataaagagacaaaattgagtgacaactcgagatcctctttttctttattcatatataatatatttctttttgtgtttacgtacagttttacaagtattcgcttattattgttcttttggtttggttgatgtgattag
  |  | | ||  |   |||     || ||||| |   |||  |||||||||||||||||| |||| || || || ||||| |||||||||||| |||| ||  | ||  ||||||||   ||||    | |   || |  | || | |||| ||||   || ||| |     ||| | |||| |    |  |    |    |||                                            
TGCAACATATACCACAACATATTCAGACAAGGATTGGTTCATTGGCTCCATCCTCCTAATCATTGCCACTCTTGCCTGGGCATCCCTCTTTGTTTTACAAgtaag-ac-tacataaag---caaaggataatactaaatatatattcactttctcttgcatcttatttt---cattccattttattcccatctctcataaagcaacgg-----------------------------------------