1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCATGAAGAGTCATCATCAAGGCGTAAGGCTGATGAGAATGTTCAGGAAGGAGCTGTTCCTGCTTATCTTCTTGATCGTGAAGACACCACTCGTGCCAAGgtttgtttgttttttcttttcaagttgagatatctataattctgtaacttggtgacggcattacattaacaagtgtgtgtttttgggtgtag
species | Arabidopsis thaliana |
transcript | AT5G06360.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGCTGTTCCHGCTTATCTTCTTGATCGTGAAGACACCACTCGTGCCAAG GTTCTTAGCAACACCATTAAACAAAAGAGGAAAGAGAAAGCTGGCAAATGGEST: gi|86050587|gb|DR346342.1|DR346342
genomic: GAGCTGTTCCTGCTTATCTTCTTGATCGTGAAGACACCACTCGTGCCAAGgtttgtttgt ... ttgggtgtagGTTCTTAGCAACACCATTAAACAAAAGAGGAAAGAGAAAGCTGGCAAATGG
EST: GAGCTGTTCCTGCTTATCTTCTTGATCGTGAAGACACCACTCGTGCCAAG GWTCTTAGCAACACCATTAAACAAAAGAGGAAAGAGAAAGCTGGCAAATGGEST: gi|164175091|gb|ES188430.1|ES188430
genomic: GAGCTGTTCCTGCTTATCTTCTTGATCGTGAAGACACCACTCGTGCCAAGgtttgtttgt ... ttgggtgtagGTTCTTAGCAACACCATTAAACAAAAGAGGAAAGAGAAAGCTGGCAAATGG
EST: GACACCACTCGTGCCAAG GTTCTTAGCAACACCATTAAACAAAAGAGGAAAGAGAAAGCTGGCAAATGGEST: gi|86050592|gb|DR346347.1|DR346347
genomic: GACACCACTCGTGCCAAGgtttgtttgt ... ttgggtgtagGTTCTTAGCAACACCATTAAACAAAAGAGGAAAGAGAAAGCTGGCAAATGG
EST: GAGCTGTTCCTGCTTATCTTCTTGATCGTGAAGACACCACTCGTGCCAAG GTTCTTAGCAACACCATTAAACAAAAGAGGAAAGAGAAAGCTGGCAAEST: gi|86050595|gb|DR346350.1|DR346350
genomic: GAGCTGTTCCTGCTTATCTTCTTGATCGTGAAGACACCACTCGTGCCAAGgtttgtttgt ... ttgggtgtagGTTCTTAGCAACACCATTAAACAAAAGAGGAAAGAGAAAGCTGGCAA
EST: GAGCTGTTCCTGCTTATCTTCTTGATCGTGAAGACACCACTCGTGCCAAG GTTCTTAGCAACACCATTAAACAAAAGAGGAAAGAGAAAGCTGGCAAATGGEST: gi|86050588|gb|DR346343.1|DR346343
genomic: GAGCTGTTCCTGCTTATCTTCTTGATCGTGAAGACACCACTCGTGCCAAGgtttgtttgt ... ttgggtgtagGTTCTTAGCAACACCATTAAACAAAAGAGGAAAGAGAAAGCTGGCAAATGG
EST: GAGCTGTTCCTGCTTATCTTCTTGATCGTGAAGACACCACTCGTGCCAAG GTTCTTAGCAACACCATTAAACAAAAGAGGAAAGAGAAAGCTGGCAAATGGEST: gi|116396688|gb|EG439280.1|EG439280
genomic: GAGCTGTTCCTGCTTATCTTCTTGATCGTGAAGACACCACTCGTGCCAAGgtttgtttgt ... ttgggtgtagGTTCTTAGCAACACCATTAAACAAAAGAGGAAAGAGAAAGCTGGCAAATGG
EST: GAGCTGTTCCTGCTTATCTTCTTGATCGTGAAGACACCACTCGTGCCAAG GTTCTTAGCAACACCATTEST: gi|86050586|gb|DR346341.1|DR346341
genomic: GAGCTGTTCCTGCTTATCTTCTTGATCGTGAAGACACCACTCGTGCCAAGgtttgtttgt ... ttgggtgtagGTTCTTAGCAACACCATT
EST: GAGCTGTTCCTGCTTATCTTCTTGATCGTGAAGACACCACTCGTGCCAAG GTTCTTAGCAACACCATTAAACAEST: gi|86050593|gb|DR346348.1|DR346348
genomic: GAGCTGTTCCTGCTTATCTTCTTGATCGTGAAGACACCACTCGTGCCAAGgtttgtttgt ... ttgggtgtagGTTCTTAGCAACACCATTAAACA
EST: GAGCTGTTCCTGCTTATCTTCTTGATCGTGAAGACACCACTCGTGCCAAG GTTCTTAGCAACACCATTAAACAAAAGAGGAAAGAGAAAGCTGGCAAATGGEST: gi|125282409|gb|EL296494.1|EL296494
genomic: GAGCTGTTCCTGCTTATCTTCTTGATCGTGAAGACACCACTCGTGCCAAGgtttgtttgt ... ttgggtgtagGTTCTTAGCAACACCATTAAACAAAAGAGGAAAGAGAAAGCTGGCAAATGG
EST: CTTATCTTCTTGATCGTGAAGACACCACTCGTGCCAAG GTTCTTAGCAACACCATTAAACAAAAGAGGAAAGAGAAAGCTGGCAAATGGEST: gi|86072911|gb|DR368668.1|DR368668
genomic: CTTATCTTCTTGATCGTGAAGACACCACTCGTGCCAAGgtttgtttgt ... ttgggtgtagGTTCTTAGCAACACCATTAAACAAAAGAGGAAAGAGAAAGCTGGCAAATGG
EST: GAGCTGTTCCTGCTTATCTTCTTGATCGTGAAGACACCACTCGTGCCAAG GTTCTTAGCAACACCATTAAACAAAAGAGGAAAGAGAAAGCTGGCAAATGG
genomic: GAGCTGTTCCTGCTTATCTTCTTGATCGTGAAGACACCACTCGTGCCAAGgtttgtttgt ... ttgggtgtagGTTCTTAGCAACACCATTAAACAAAAGAGGAAAGAGAAAGCTGGCAAATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATGAAGAGTCATCATCAAGGCGTAAGGCTGATGAGAATGTTCAGGAAGGAGCTGTTCCTGCTTATCTTCTTGATCGTGAAGACACCACTCGTGCCAAGgtttgtttgttttttcttttcaagttgagatatctataattctgtaacttggtgacggcattacattaacaagtgtgtgtttttgggtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA