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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCCTGAAAGCATCTACAAGAATTTGGAAAAGACGACTCAAATGTTTAGGTTTACACTGCCTTTTCCAATGCTCGCATACCCTTTCTACTTGgtaatccttcatccttctgcatcttactataatctcatggaagaagctcatgtttcacatctgattcactgtattcttgatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G05580.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163993650|gb|EL994917.1|EL994917
EST:     ACACTGCCTTTTCCAATGCTCGCATACCCTTTCTACTTG                         TGGAACAGAAGTCCAGGGAAACAAGGTTCTCATTATCATCCGGACAGTGAC
genomic: ACACTGCCTTTTCCAATGCTCGCATACCCTTTCTACTTGgtaatccttc ... cttgatgcagTGGAACAGAAGTCCAGGGAAACAAGGTTCTCATTATCATCCGGACAGTGAC
EST: gi|125192409|gb|EL207363.1|EL207363
EST:     TGTTTAGGTTTACACTGCCTTTTCCAATGCTCGCATACCCTTTCTACTTG                         TGGAACAGAAGTCCAGGGAAACAAGGTTCTCATTATCATCCGG
genomic: TGTTTAGGTTTACACTGCCTTTTCCAATGCTCGCATACCCTTTCTACTTGgtaatccttc ... cttgatgcagTGGAACAGAAGTCCAGGGAAACAAGGTTCTCATTATCATCCGG