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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCTAGTTCGAATGACTCTTACGCATGATGAGTACCCATTAGACTATTTGTTCCCATCTAACGCTGAGgtttgtgtttatcttgtttttatgttgaatggagtaactgattaaaaaaaaaagctgaactctttgagttgcaaaaaacag

Basic information

species Arabidopsis thaliana
transcript AT5G05540.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164080485|gb|ES081035.1|ES081035
EST:     GACTATTTGTTCCCATCTAACGCTGAG                         GATTGGGTTAGAACAGGGCTTGGCAAGAAGAAGATGGAACCGACAAAGATC
genomic: GACTATTTGTTCCCATCTAACGCTGAGgtttgtgttt ... caaaaaacagGATTGGGTTAGAACAGGGCTTGGCAAGAAGAAGATGGAACCGACAAAGATC
EST: gi|19878469|gb|AU239300.1|AU239300
EST:     TTACGCATGATGAGTACCCATTAGACTATTTGTTCCCATCTAACGCTGAG                         GATTGGGTTAGAACAGGGCTTGGCCANGAAGAAGATGGAACCGACAAAAGA
genomic: TTACGCATGATGAGTACCCATTAGACTATTTGTTCCCATCTAACGCTGAGgtttgtgttt ... caaaaaacagGATTGGGTTAGAACAGGGCTTGGCAA-GAAGAAGATGGAACCGACAAA-GA
EST: gi|164222062|gb|EL979733.1|EL979733
EST:     CTATTTGTTCCCATCTAACGCTGAG                         GATTGGGTTAGAACAGGGCTTGGCAAGAA
genomic: CTATTTGTTCCCATCTAACGCTGAGgtttgtgttt ... caaaaaacagGATTGGGTTAGAACAGGGCTTGGCAAGAA