1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATGCGGGCGCTGAAAGATTTGGGATTGGATGTAATAAAAGGAACTGTCTCAACTGAAGGATCCATTAAGCAGACCAAATTTTCTATAACGAAACGgtaagaaaggcctttcttttcctggtctccctttgctttagatgattttctatcacttattgacttctcacttgttcaataggatgcacaattttgtctc...
species | Arabidopsis thaliana |
transcript | AT5G04740.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGATCCATTAAGCAGACCAAA-TTTCTATAACGAAACG AGACACTGGCCGGAAAGTGGAAGATCCTGACTTGTTGGAACAAATCCGATTEST: gi|125072716|gb|EL137308.1|EL137308
genomic: GGATCCATTAAGCAGACCAAATTTTCTATAACGAAACGgtaagaaagg ... ttcacaccagAGACACTGGCCGGAAAGTGGAAGATCCTGACTTGTTGGAACAAATCCGATT
EST: TCTCAACTGAAGGATCCATTAAGCAGACCAAATTTTCTATAAACGAAACG AGACACTGGCCGGAAAGTGGAAGATCCEST: gi|164073327|gb|EL982896.1|EL982896
genomic: TCTCAACTGAAGGATCCATTAAGCAGACCAAATTTTCTATAA-CGAAACGgtaagaaagg ... ttcacaccagAGACACTGGCCGGAAAGTGGAAGATCC
EST: CAACTGAAGGGTCCATTAAGCAGACCAAATTTTCTATAACGAAACG AGACACTGGCCGGAAAGTGGAAGATCCTGACTTGTTGGAACAAATCCGATTEST: gi|125021728|gb|EL093997.1|EL093997
genomic: CAACTGAAGGATCCATTAAGCAGACCAAATTTTCTATAACGAAACGgtaagaaagg ... ttcacaccagAGACACTGGCCGGAAAGTGGAAGATCCTGACTTGTTGGAACAAATCCGATT
EST: TGAAGGATCCATTAAGCAGACCAAATTTTCTATAACGAAACG AGACACTGGCCGGAAAGTGGAAGATCCTGACTTGTTGGAACAAATCCGATTEST: gi|116403963|gb|EG446555.1|EG446555
genomic: TGAAGGATCCATTAAGCAGACCAAATTTTCTATAACGAAACGgtaagaaagg ... ttcacaccagAGACACTGGCCGGAAAGTGGAAGATCCTGACTTGTTGGAACAAATCCGATT
EST: ATCTCAACTGAAGGATCCATTAAGCAGACCAAATCTTCTATAACGAAACG AGACACTGGCCGGAAAGTGGAAGATCCTGACTTGTTGGAACAAATCCGATTEST: gi|124994550|gb|EL066819.1|EL066819
genomic: GTCTCAACTGAAGGATCCATTAAGCAGACCAAATTTTCTATAACGAAACGgtaagaaagg ... ttcacaccagAGACACTGGCCGGAAAGTGGAAGATCCTGACTTGTTGGAACAAATCCGATT
EST: CAGACCAAATTTTCTATAACGAAACG AGACACTGGCCGGAAAGTGGAAGATCCTGACTTGTTGGAACAAATCCGATTEST: gi|164139721|gb|ES202520.1|ES202520
genomic: CAGACCAAATTTTCTATAACGAAACGgtaagaaagg ... ttcacaccagAGACACTGGCCGGAAAGTGGAAGATCCTGACTTGTTGGAACAAATCCGATT
EST: GTCTCAACTGAAGGATCCATTAAGCAGACCAAATTTTCTATAACGAAACG AGACACTGGCCGGAAAGTGGAA
genomic: GTCTCAACTGAAGGATCCATTAAGCAGACCAAATTTTCTATAACGAAACGgtaagaaagg ... ttcacaccagAGACACTGGCCGGAAAGTGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCGGGCGCTGAAAGATTTGGGATTGGATGTAATAAAAGGAACTGTCTCAACTGAAGGATCCATTAAGCAGACCAAATTTTCTATAACGAAACGgtaagaaaggcctttcttttcctggtctccctttgctttagatgattttctatcacttattgacttctcacttgttcaataggatgcacaattttgtctc
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcccttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctcac