1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGATGTCCGCATCACACCAAACCAAAACATTGTCTTGTGTGATATAAAGACTGAATGGAAGCGTCCCATCACCACAGTACTTGCTCAGGCCGGCTTACTGgtaagcagttttatttgacccataaggtatgaaaatctaatagctattgtgtcttaagctgagcaaaccattgcttatttgtgcag
species | Arabidopsis thaliana |
transcript | AT5G04590.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGGCCGGCTTACTG CAACCTGAGTTTGTCGACCCATTAAACCAAACTGCAATGGCTTGCCCAGCTEST: gi|125168487|gb|EL193141.1|EL193141
genomic: AGGCCGGCTTACTGgtaagcagtt ... atttgtgcagCAACCTGAGTTTGTCGACCCATTAAACCAAACTGCAATGGCTTGCCCAGCT
EST: CTGAATGGAAGCGTCCCATCACCACAGTACTTGCTCAGGCCGGCTTACTG CAACCTGAGTTTGTCGACCCATTAAACCAAACTGCAATEST: gi|86060690|gb|DR356447.1|DR356447
genomic: CTGAATGGAAGCGTCCCATCACCACAGTACTTGCTCAGGCCGGCTTACTGgtaagcagtt ... atttgtgcagCAACCTGAGTTTGTCGACCCATTAAACCAAACTGCAAT
EST: CTGAATGGAAGCGTCCCATCACCACAGTACTTGCTCAGGCCGGCTTACTG CAACCTGAGTTTTGTCGACCCATTEST: gi|124720709|gb|EH812111.1|EH812111
genomic: CTGAATGGAAGCGTCCCATCACCACAGTACTTGCTCAGGCCGGCTTACTGgtaagcagtt ... atttgtgcagCAACCTGAGTTT-GTCGACCCATT
EST: GAATGGAAGCGTCCCATCACCACAGTACTTGCTCAGGCCGGCTTACTG CAACCTGAGTTTGTCGACCCATTAAAEST: gi|164020808|gb|ES108578.1|ES108578
genomic: GAATGGAAGCGTCCCATCACCACAGTACTTGCTCAGGCCGGCTTACTGgtaagcagtt ... atttgtgcagCAACCTGAGTTTGTCGACCCATTAAA
EST: GGCCGGCTTACTG CAACCTGAGTTTGTCGACCCATTAAACCAAAACTGCAATGGCTTGCCCAGC
genomic: GGCCGGCTTACTGgtaagcagtt ... atttgtgcagCAACCTGAGTTTGTCGACCCATTAAACCAAA-CTGCAATGGCTTGCCCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGTCCGCATCACACCAAACCAAAACATTGTCTTGTGTGATATAAAGACTGAATGGAAGCGTCCCATCACCACAGTACTTGCTCAGGCCGGCTTACTGgtaagcagttttatttgacccataaggtatgaaaatctaatagctattgtgtcttaagctgagcaaaccattgcttatttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG