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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTCGGCTATCGGAGGATGAAGCTCGGTTCTACACTGCAGAAGTTGTGGATGCTCTTGAGTATATACATAGTATGGGACTGATTCATCGAGATATTAAGgtagtttctctttcgaatagcttctcttttatggtcttaacaatagctgtgctaagtgtttttcttgaaatggtag

Basic information

species Arabidopsis thaliana
transcript AT5G04510.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G04510.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G33140.1 (Glycine max), 5'ss of exon 4
AGGTCGGCTATCGGAGGATGAAGCTCGGTTCTACACTGCAGAAGTTGTGGATGCTCTTGAGTATATACATAGTATGGGACTGATTCATCGAGATATTAAGgtagtttctctttcgaatagcttctcttttatggtcttaacaatagctgtgctaagtgtt---tttcttgaaatggtag
|||||| ||||| |||||||| || || |||||  | || |||||||| |||||||| || || ||||||| | ||||| | || ||||| ||||||||||||||| |    | | || | |   ||       |   |   || ||| || | | | ||   |||||| || ||  ||
AGGTCGTCTATCAGAGGATGAGGCACGATTCTATGCAGCTGAAGTTGTTGATGCTCTCGAATACATACATAATTTGGGAGTCATACATCGTGATATTAAGgtagttccg---tggcatggttatactgcatcattgccatatatggctatg-tgaatattaaatttcttcaactg-cag

upper sequence: AT5G04510.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G34430.1 (Glycine max), 5'ss of exon 4
AGGTCGGCTATCGGAGGATGAAGCTCGGTTCTACACTGCAGAAGTTGTGGATGCTCTTGAGTATATACATAGTATGGGACTGATTCATCGAGATATTAAGgtagtttctctttcgaatagcttctcttttatggtcttaacaatagctgtgctaagtgtt---tttcttgaaatggtag
|||||| ||||| ||| |||| || || |||||  | || |||||| | ||||||||||| || ||||||| | ||||| | || ||||| |||||||||||||||   || | | ||   |   ||       |   |   || ||  || | | | ||   |||||| || ||  ||
AGGTCGTCTATCAGAGAATGAGGCACGATTCTATGCAGCTGAAGTTATCGATGCTCTTGAATACATACATAATTTGGGAGTCATACATCGTGATATTAAGgtagtt---ctgtggcatgattatactgcatcattgccatatatggccatg-tgaatattaaatttcttcaactg-cag

upper sequence: AT5G04510.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv13s0074g00100.t01 (Vitis vinifera), 5'ss of exon 5
AGGTCGGCTATCGGAGGATGAAGCTCGGTTCTACACTGCAGAAGTTGTGGATGCTCTTGAGTATATACATAGTATGGGACTGATTCATCGAGATATTAAGgtagtttctctttcgaatagcttctcttttatggtcttaacaatagctgtgctaagtgtttttcttgaaatggtag
||||||  | || ||| |||||||||| |||||  | || |||||||| ||||||||||| ||||| |||||| | ||| |||| || || |||||||||||| |||   || |  |||   | | |  | ||    | | |||     |  |||    ||||| |||| | | ||
AGGTCGTTTGTCAGAGAATGAAGCTCGCTTCTATGCAGCTGAAGTTGTAGATGCTCTTGAATATATTCATAGTCTAGGATTGATACACCGGGATATTAAGgta-ttttaattgcctatacaatatttcctttgcatgtgaaaat-----tattaa---cttttcatgaa-ttgcag