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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCTGACATAATTGATTTACCCTGTCGAATTGCCAAAGGATGTAAATATTGTAATAGAGACGATGCCGCTTCGTGCCTTGTCAGGTTTGGGCTTGATAGgtatgatacaagtgattgcgaaagagcctttattttcctattttctttgctttttgtttctggaaaaacaattatagctccaaatgtttcgcagaatattaggttgatgacgtggaaaatttgttttggtttcag

Basic information

species Arabidopsis thaliana
transcript AT5G03730.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G03730.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA13G21480.1 (Glycine max), 5'ss of exon 4
TGGCTGACATAATTGATTTACCCTGTCGAATTGCCAAAGGATGTAAATATTGTAATAGAGACGATGCCGCTTCGTGCCTTGTCAGGTTTGGGCTTGATAGgtatgatacaagtgattgcgaaagagcctttattttcctattttctttgctttttgtttctggaaaaacaattatagctccaaatgtttcgcagaatattaggttgatgacgtggaaaatttgttttggtttcag
| ||||||   ||||||||||| ||||||||||| || || ||||||||||| || || || |||||  | || || |||||  | ||||||||||| |||||||       | ||||| ||  | | | || ||| || ||   |  |     ||       ||||  | ||     ||||   |||  |  ||  ||  ||   | |||                        
TAGCTGACGCCATTGATTTACCATGTCGAATTGCTAAGGGCTGTAAATATTGCAAAAGGGATGATGCTACATCTTGTCTTGTTCGATTTGGGCTTGAGAGgtatg---tgctttattgccaagca-catatacttttctgttaa-taagtagactgcaatgtaaaaattagtt-----tccatgagttctgatgaccat--ggaaaaggact-----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116475867|gb|EG518459.1|EG518459
EST:     TGTAATAGAGACGATGCCGCTTCGTGCCTTGTCAGGTTTGGGCTTGATAG                         GGAGTACCTGGTTGATTTAGTAGGAAAGCCAGGTCACTTATGGGAGCCTGA
genomic: TGTAATAGAGACGATGCCGCTTCGTGCCTTGTCAGGTTTGGGCTTGATAGgtatgataca ... ttggtttcagGGAGTACCTGGTTGATTTAGTAGGAAAGCCAGGTCACTTATGGGAGCCTGA