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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGGACAGTATAAAAGATTGCGTGAGGAAATAGACAAGTATGAGGGTGGTCTTGAGGCATTCTCTCGTGGCTATGAAAAGTTAGGATTTTCGCGCAGgtaactatttgctaccacctatatagttctccagtagaataccaagtttaggctgtagtgtcacactgttttcatttcatcactagcatattatatgttttcctaatggtagttacattgctattacag

Basic information

species Arabidopsis thaliana
transcript AT5G03650.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116483369|gb|EG525961.1|EG525961
EST:     GGTCTTGAGGCATTCTCTCGTGGCTATGAAAAGTTAGGATTTTCGCGCAG                         TGATGCCGGTATAACTTATAGAGAGTGGGCGCCTGGAGCTAAG
genomic: GGTCTTGAGGCATTCTCTCGTGGCTATGAAAAGTTAGGATTTTCGCGCAGgtaactattt ... gctattacagTGATGCCGGTATAACTTATAGAGAGTGGGCGCCTGGAGCTAAG
EST: gi|116412441|gb|EG455033.1|EG455033
EST:     GGTCTTGAGGCATTCTCTCGTGGCTATGAAAAGTTAGGATTTTCGCGCAG                         TGATGCCGGTATAACTTATAGGGAGTGGGCGCCTGGAGCTAAG
genomic: GGTCTTGAGGCATTCTCTCGTGGCTATGAAAAGTTAGGATTTTCGCGCAGgtaactattt ... gctattacagTGATGCCGGTATAACTTATAGAGAGTGGGCGCCTGGAGCTAAG
EST: gi|125241982|gb|EL256067.1|EL256067
EST:     GGTCTTGAGGCATTCTCTCGTGGCTATGAAAAGTTAGGATTTTCGCGCAG                         TGATGCCGGTATAACTTA
genomic: GGTCTTGAGGCATTCTCTCGTGGCTATGAAAAGTTAGGATTTTCGCGCAGgtaactattt ... gctattacagTGATGCCGGTATAACTTA
EST: gi|116436516|gb|EG479108.1|EG479108
EST:     GGTCTTGAGGCATTCTCTCGTGGCTATGAAAAGTTAGGATTTTCGCGCAG                         TGATGCCGGTATAACTTATAGAGAGTGGGCGCCTGGAGCTAAG
genomic: GGTCTTGAGGCATTCTCTCGTGGCTATGAAAAGTTAGGATTTTCGCGCAGgtaactattt ... gctattacagTGATGCCGGTATAACTTATAGAGAGTGGGCGCCTGGAGCTAAG