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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACTGGTTATATTCTCAAGGAAGATGAAAATAACCTCGAGGCGTTGCTCCTTCGTGGCCGTGCCTACTACTATTTGGCGGATCATGATATCGCCCAAAGgtttggtctaacttcaaccttattttcaatcagagagagtttggggtccaaaacagatatacttaagtaaactttctgtttcag

Basic information

species Arabidopsis thaliana
transcript AT5G03160.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G03160.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA03G33710.1 (Glycine max), 5'ss of exon 4
AGACTGGTTATATTCTCAAGGAAGATGAAAATAACCTCGAGGCGTTGCTCCTTCGTGGCCGTGCCTACTACTATTTGGCGGATCATGATATCGCCCAAAGgtttggtctaacttcaaccttattttcaatcagaga---gagtttggggtccaaaacagatatacttaagtaaactttctgtttcag
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AGTCTGGGTTTCTTCTCAAGGAAGATGAAAATAATTTAGAGGCATTGTTGTTACGTGGCCGTGCATATTACTATTTAGCTGATCATGATGTTGCCACTAGgtttgtcttg---tggaaattatgttaacataggcatttgaataattttttttatataatcaatcttatatgtgaacatatattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125185974|gb|EL200928.1|EL200928
EST:     CTTCGTGGCCGTGCCTACTACTATTTGGCGGATCATGATATCGCCCAAAG                         GCACTTACCAAAAAGGGCTTCGTCTTGATCCGGAACACAG
genomic: CTTCGTGGCCGTGCCTACTACTATTTGGCGGATCATGATATCGCCCAAAGgtttggtcta ... tctgtttcagGCA-TTACCAAAAAGGGCTTCGTCTTGATCCGGAACACAG