1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTCGCAGATCCGAGCTAGGAGAATCAGGATGTCAGAAGAGAATCAGGCTCGCCAGAAACAACTCCTTCAGAAACATGCTAAAGAGCTAGCTGGCTTGAAGgtctgtctctcatattcatctgattcagtttttttcttgttattcaaagtttcttccgttgtttttggtgagaggattgctaagaagtaagaactgttga...
species | Arabidopsis thaliana |
transcript | AT5G03040.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCCAGAAACAACTCCTTCAGAAACATGCTAAAGAGCTAGCTGGCTTGAAG AACGGGGATAAEST: gi|125268551|gb|EL282636.1|EL282636
genomic: GCCAGAAACAACTCCTTCAGAAACATGCTAAAGAGCTAGCTGGCTTGAAGgtctgtctct ... ctgctcacagAACGGGGATAA
EST: ACATGCTAAAGAGCTAGCTGGCTTGAAG AACGGGGATAACTGGAATGATAGCATTCAATCAAAGGAGAAAGTTGAAGCGEST: gi|47828004|gb|CK117688.1|CK117688
genomic: ACATGCTAAAGAGCTAGCTGGCTTGAAGgtctgtctct ... ctgctcacagAACGGGGATAACTGGAATGATAGCATTCAATCAAAGGAGAAAGTTGAAGCG
EST: GCCAGAAACAACTCCTTCAGAAACATGCTAAAGAGCTAGCTGGCTTGAAG AACGGGGATAACTGGAATGATAGCATTCAATCAAAGGAGAAAGTTGAAGCGEST: gi|124918312|gb|EH992161.1|EH992161
genomic: GCCAGAAACAACTCCTTCAGAAACATGCTAAAGAGCTAGCTGGCTTGAAGgtctgtctct ... ctgctcacagAACGGGGATAACTGGAATGATAGCATTCAATCAAAGGAGAAAGTTGAAGCG
EST: CTGGCTTGAAG AACGGGGATAACTGGAATGATAGCATTCAATCAAAGGAGAAAGTTGAAGCG
genomic: CTGGCTTGAAGgtctgtctct ... ctgctcacagAACGGGGATAACTGGAATGATAGCATTCAATCAAAGGAGAAAGTTGAAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGCAGATCCGAGCTAGGAGAATCAGGATGTCAGAAGAGAATCAGGCTCGCCAGAAACAACTCCTTCAGAAACATGCTAAAGAGCTAGCTGGCTTGAAGgtctgtctctcatattcatctgattcagtttttttcttgttattcaaagtttcttccgttgtttttggtgagaggattgctaagaagtaagaactgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctctcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagtaa