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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGAAAACATTAAGCCAAATATTTATGTTATTAACAGTCTAATGAATGTTAATTCCCATGATCTTGGGTACACACTAAAAGTATACAAGAATATGCAGgtatgttctttcttctgtctcttgaatacaagtatttgaattgtctagagagtattttagatttaggagtgggtgtggactgaccttgaaactctacatgtcatgggcag

Basic information

species Arabidopsis thaliana
transcript AT5G02830.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G02830.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA03G33410.1 (Glycine max), 5'ss of exon 4
CAAAGAAAACATTAAGCCAAATATTTATGTTATTAACAGTCTAATGAATGTTAATTCCCATGATCTTGGGTACACACTAAAAGTATACAAGAATATGCAGgtatgttctttcttctgtctcttgaatacaagtatttgaattgtctagagagtattttagatttaggagtgggtgtggactgaccttgaaactctacatg-tcatgggcag
 ||  |||| || |  |||||||| || ||  | |||||||| |||||||| ||||||||||||||| | |||||| ||||  ||||  | ||||||||||||     | ||      | |   ||||  |  ||   |  ||  || | |       | |   |    |    |   | |   || |||     | ||| |     ||| 
TAATCAAAATATCACTCCAAATATATACGTGTTCAACAGTCTCATGAATGTGAATTCCCATGATCTTAGCTACACATTAAATCTATATCAAAATATGCAGgtaacccttctc------cccccaaatatcatcatcaca--tgcatacacacacacacacaccaaaagataaaagcaaaat--tctagaacagagatatgctttcatgca-

upper sequence: AT5G02830.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA19G36140.1 (Glycine max), 5'ss of exon 4
CAAAGAAAACATTAAGCCAAATATTTATGTTATTAACAGTCTAATGAATGTTAATTCCCATGATCTTGGGTACACACTAAAAGTATACAAGAATATGCAGgtatgttctttcttctgtctcttgaatacaagtatttgaattgtctagagagtattttagatttaggagtgggtgtggactgaccttgaaactctacatgtcatgggcag
 ||  |||| || |  |||||||| |||||  | |||||||| |||||||| ||||||||||||||| | |||||  ||||  ||||  | ||||||||||||      || | ||| | ||  ||||  | | |      |    | | |       |||   | ||  ||          |     ||  | | ||  |  |   |  
TAATCAAAAGATCACTCCAAATATATATGTGTTCAACAGTCTCATGAATGTGAATTCCCATGATCTTAGCTACACGTTAAATCTATATCAAAATATGCAGgtaa-----ttgtgctgcc-ctcaaatatcattgtcacgtatacacacacacacccaaaga---aagaaaggaaaaaattccagaacaaagatatgcacatgcttatct-